| Compound | Pathway involved |
| L-Proline | Arginine and proline metabolism, Aminoacyl-tRNA biosynthesis |
| L-Tryptophan | Glycine, serine and threonine metabolism, Aminoacyl-tRNA biosynthesis, Phenylalanine, tyrosine and tryptophan biosynthesis (Shikimate pathway), Glucosinolate biosynthesis, Tryptophan metabolism, |
| 4-Aminobutanoate (GABA) | Arginine and proline metabolism, Alanine, aspartate and glutamate metabolism, Butanoate metabolism |
| L-Serine | Glycine, serine and threonine metabolism, Aminoacyl-tRNA biosynthesis, Cyanoamino acid metabolism, Cysteine and methionine metabolism, Methane metabolism, Sulfur metabolism, Sphingolipid metabolism |
| Threonine | Aminoacyl-tRNA biosynthesis, Valine, leucine and isoleucine biosynthesis |
| Sucrose | Galactose metabolism, Starch and sucrose metabolism |
| Raffinose | Galactose metabolism |
| N-Acetyl-DL-glutamic acid | Arginine and proline metabolism |
| Aspartate | Glycine, serine and threonine metabolism, Arginine and proline metabolism, Carbon fixation in photosynthetic organisms, Alanine, aspartate and glutamate metabolism, Aminoacyl-tRNA biosynthesis, Cyanoamino acid metabolism, beta-Alanine metabolism, Cysteine and methionine metabolism, Lysine biosynthesis, Nicotinate and nicotinamide metabolism |
| Pyruvate | Glycine, serine and threonine metabolism, Carbon fixation in photosynthetic organisms, Alanine, aspartate and glutamate metabolism, Cysteine and methionine metabolism, Citrate cycle (TCA cycle), Butanoate metabolism, Pyruvate metabolism, C5-Branched dibasic acid metabolism, Glycolysis or Gluconeogenesis, Valine, leucine and isoleucine biosynthesis, Pantothenate and CoA biosynthesis, Terpenoid backbone biosynthesis |
| Phosphoenolpyruvic acid | Carbon fixation in photosynthetic organisms, Citrate cycle (TCA cycle), Pyruvate metabolism, Phenylalanine, tyrosine and tryptophan biosynthesis, Glycolysis or Gluconeogenesis |
| Nicotinate | Nicotinate and nicotinamide metabolism |
| Glyceric acid | Glycerolipid metabolism |
| Oxidized glutathione | Glutathione metabolism |
| Spermidine | Arginine and proline metabolism, beta-Alanine metabolism, Glutathione metabolism |
| Palmitoleic acid | Fatty acid biosynthesis |
| Pyridoxal | Vitamin B6 metabolism |
| Linamarin | Cyanoamino acid metabolism; biosynthesis of secondary metabolites |
| Pipecolate | Lysine degradation; biosynthesis of secondary metabolites |
| Malonate | Pyrimidine metabolism; beta-Alanine metabolism |
| Alpha-Aminoadipate | Lysine biosynthesis; lysine degradation; biosynthesis of secondary metabolites |
| Piperidine | Tropane, piperidine and pyridine alkaloid biosynthesis; protein digestion and absorption |