BDV-f3 (4) | V1 | G right nucleotide in position 7; CU or A-U in position 17; G:Y, GG or AG in position 18 | |
V2 | UA in position 2 | ||
V3 | UU or UC in position 7 | ||
BDV-f4 (4, 7) | V1 | G right nucleotide in position 7; CU or CC in position 17; Y:G in position 18 | |
V2 | Y:G or C U bulge in position 2 | ||
V3 | U U or U C bulges in position 7 | ||
BDV-g1 (TU) | V1 | G:Y in position 1 | |
V2 | U-A, C-G or U*G in position 3 | ||
V3 | A-U or CU in position 6 (CU all strains from Sicily; shared only with B V60 and D2 AV only) | ||
BDV-g2 (TU) | V1 | A-U in position 1 | |
V2 | A-U or AC in position 3 | ||
V3 | AC, UU or CC in position 6 | ||
BDV-i1 | V1 | C C bulge in position 8; A-U in position 19 | |
V3 | C A bulge in position 8 | ||
BDV-i2 | V1 | A G bulge in position 8; A G bulge in position 19 | |
V3 | A A bulge in position 8 | ||
BDV-j1 (3) | V1 | A-U in position 3; A-U in position 14; CC in position 19 | |
V3 | Y:G in position 8 | ||
BDV-j2 (3) | V1 | G:Y in position 3; GC in position 14; UA or UG in position 19 | |
V3 | G:Y, U C or A A bulges in position 8 | ||
BDV-j3 (3) | V1 | G:Y in position 3; GC in position 14; UC in position 19 | |
V3 | Y:G in position 8; V3/9 A | ||
CSFV genotypes | Locus | Characteristic PNS markers | |
CSFV-a | V1 | A C bulge in position 15 (exception G:Y and A-U) | |
V2 | U-A in position 5; G:Y in position 7 | ||
V3 | A-U in position 1 (exception A G bulge) | ||
CSFV-b | V1 | G:Y in position 15; A G bulge in position 19; U-A in position 20 | |
V2 | A-U in position 5; A C bulge in position 7 | ||
V3 | A-U in position 1; U C bulge in position 6 | ||
CSFV-c | V1 | A-U in position 15 | |
V2 | U-A in position 5; G:Y in position 7 | ||
V3 | A G bulge in position 1 | ||
CSFV-d | V1 | A C bulge in position 15 | |
V2 | U-A in position 5; G:Y in position 7 | ||
V3 | U U bulge in position 1 | ||
CSFV genotype variants | Locus | Characteristic PNS markers | |
CSFV-a1 | V1 | AC in position 15 | |
V2 | A-U in position 1; A-U in position 6 | ||