V2 | A-U in position 1; U-A in position 5 | |
V3 | G:Y in position 4; A A or C A bulges in position 8. | |
BDV-j (3) | V1 | G:Y in position 3 (exception A-U); G:Y in position 9; G:Y in position 14 (exception A-U); U-A or Y:G in position 16; C C, U C bulges, U-A or Y:G in position 19 |
V2 | A-U in position 1; U-A in position 5 | |
V3 | G:Y in position 4; Y:G, G:Y, U C or A A bulges in position 8 | |
BDV sub-genotypes | Locus | Characteristic PNS markers |
BDV-a1 (1) | V1 | U right nucleotide in position 7; A-U in position 12; A-U or CU in position 15; AA or AG in position 18 |
BDV-a2 (1) | V1 | G right nucleotide in position 7; G:Y or CC in posizion 12; G:Y in position 15; AG or GG in position 18 |
BDV-a3 (1) | V1 | A right nucleotide in position 7; G:Y in position 12; AC in position 15; AG in position 18 |
BDV-a4 (1) | V1 | G right nucleotide in position 7; G:Y in posizion 12; G:Y in position 15; A-U in position 18 |
BDV-c1.1 (Sw) | V1 | A-U in position 16 |
V2 | A-U in position 1 | |
V3 | G:Y in position 4 | |
BDV-c1.2 (8) | V1 | A-U in position 16 |
V2 | A-U in position 1 | |
V3 | A-U in position 4 | |
BDV-c1.3 (8) | V1 | A C bulge in position 16; G:Y in position 21 |
V2 | A-U in position 1 | |
V3 | G:Y in position 4 | |
BDV-c2 (6) | V1 | G:Y or U C and U U bulges in position 20; U or U U bulge in position 21 |
V2 | A C bulge in position 1 | |
V3 | C C bulge in position 7 (exception U C bulge) | |
BDV-d1 (3) | V1 | CU or UU in position 19 |
V3 | A-U in position 4; A G bulge in position 8 | |
BDV-d2 (3) | V1 | CA in position 19 |
V3 | G:Y in position 4; A A bulge in position 8 | |
BDV-e1 (4) | V1 | G:Y in position 16 |
V3 | U-A in position 8 | |
BDV-e2 (4) | V1 | A-U in position 16; G in position 21 |
V3 | CA in position 8 | |
BDV-f1 (4, 5)
| V1 | G right nucleotide in position 7; CU in position 17; GG in position 18 |
V2 | G:Y or Y:G in position 2 | |
V3 | UU or UC in position 7 | |
BDV-f2 (4) | V1 | U right nucleotide in position 7; Y:G in position 17; G:Y in position 18 |
V2 | UA in position 2 | |
V3 | A-U or AC in position 7 |