BVDV-3.2

V1

G:Y in position 1; A-U in position 8; U-A in position 15; A G bulge in position 18

V2

C A bulge in position 3

V3

A C bulge in position 4; Y:G in position 8

BVDV-3.3

V1

A-U in position 1; Y:G in position 8; C A bulge in position 15; A A bulge in position 18

V2

Y:G in position 3

V3

U-A in position 4; G:Y in position 8

BVDV-3.4

V1

C C bulge in position 1; Y:G in position 8; U-A in position 15; C U bulge in position 18

V2

Y:G in position 3

V3

A-U in position 4; Y:G in position 8

BDV genotypes

Locus

Characteristic PNS markers

BDV-a (1)

V1

A-U or C U bulge in position 9; A A or A G bulges in position 18 (exception A-U and G G bulge)

V2

A-U in position 1; A-U, Y:G or U-A in position 5

V3

A A, G A or A C bulges in position 8 (exceptions G:Y, A)

BDV-b (2)

V1

A-U in position 9 (exception G:Y); U-A, Y:G in position 16

V2

A-U in position 1; U-A in position 5

V3

C U bulge in position 1; G:Y or U U bulge in position 2; A A bulge in position 8 (exception A-U)

BDV-c (6, 8, SW)

V1

G:Y in position 9; A-U, A G or A C bulges in position 16

V2

A-U or A C bulge in position 1; U-A in position 5

V3

A A bulge in position 8

BDV-d (3)

V1

AU in position 3; G:Y in position 9; A-U in position 12; A-U in position 14; U-A in position 16; C A, C U or U U bulges in position 19

V2

G:Y in position 1; U-A in position 5

V3

A G or A A bulges in position 8

BDV-e (4)

V1

G:Y in position 9; G:Y or G G bulge in position 18; G:Y or G G bulge in position 20

V2

G:Y in position 1; Y:G in position 5 (shared with A only)

V3

U-A or C A bulge in position 8

BDV-f (4, 5, 7)

V1

G:Y in position 9 (exception A-U); A-U in position 16 (exception G*U); Y:G, G:Y or G G bulge in position 18 (exception A G bulge)

V2

G:Y in position 1 (exceptions A-U and C U or G G bulges); Y:G in position 5 (shared with A only)

V3

U-A, Y:G, A A or C A bulges in position 8 (exception U C bulge)

BDV-g (TU)

V1

G:Y or A-U in position 9

V2

A-U in position 1; A-U in position 5 (exception G:Y)

V3

U-A in position 2 (g1 V3/2 CG―strains TU ITA sicily―Shared only with v60-bd-b); Y:G in position 7 (exception U-A―shared with a1 and e1); U or C in position 8

BDV-h (3)

V1

AU in position 3; G:Y in position 9; U-A in position 12; A-U in position 14; U-A in position 16; CC in position 19

V2

G:Y or A-U in position 1; U-A in position 5

V3

G:Y in position 4; A-U or A A bulge in position 8

BDV-i

V1

V1/8 CC/AG; G:Y in position 9 (exception GA bulge); Y:G in position 16; A-U or A G bulge in position 19