| BVDV-1.16 (L) | CG, GC, GC | V2/6 UA | |
| BVDV-1.17 (F) | CG, GC, GC | V3/6 AA (exception G A bulge); V3/8 A A bulge | |
| BVDV-1.18 (P) | CG, GC/AC, GC | V1/17 AU/CA V2/6 GC; V3/3 UA; V3/8 AA | |
| BVDV-1.19 (G) | CG, GY, GC | V1/15 CG; V2/5 AU (exception species marker) | |
| BVDV-1.20 (L, X) | BVDV-1.20.1 YG, GY, AU (Root A non A) | BVDV-1.20.1 V1/15 CG; V2/5 AU (exception species marker) | |
| BVDV-1.20.2 YG, GY, GC | BVDV-1.20.2 V1/15 CA; V2/5 AU (exception species marker) | ||
| BVDV-1.21 (U)
| UA, GC, UA (origine B, unique) | BVDV-1.21.1 V1/15 CG (exception species marker); V3/4 exception G A bulge; V3/5 CG (exception species marker); V3 loop position 10 CG (exception species marker) (exception C C bulge); V3 size longer (11bp - 21n) (exception 10bp - 20n); V3/2 AU | |
| BVDV-1.21.2 V3/4 exception G A bulge; V3/5 CG (exception species marker); V3 loop position 10 CG (exception species marker) (exception C C bulge); V3 size longer (11 bp - 21n) (exception 10 bp ? 20n) V3/2 GU | |||
| BVDV-1.22 (K) | BVDV-1.22.1 CG, AC, GC | BVDV-1.22.1 V2/3 UA; V2/5 GC | |
| BVDV-1.22.2 CG, GC, GC | BVDV-1.22.2 V2/3 UA; V2/5 UA (exception species marker) | ||
| BVDV-1.23 (P) | CG, AC, GC | V3/5 GA | |
| BVDV-2 genotypes | Locus | Characteristic PNS markers | |
| BVDV-2a | V1 | C-G in position 16; U*G, C-G or U-A in position 18 (exceptions U C and C A bulges) | |
| BVDV-2b | V1 | G-C or G*U in position 12; U-A in position 16 (exception CA bulge); G A, G G or A C bulges or G-C in position 17; G G or G A bulges in position 18 | |
| V3 | higher V3 loop, U in position 10 (exceptions G*U, UA and A) | ||
| BVDV-2c | V1 | U-A in position 8; G A bulge in position 17; G A bulge in position 18; C C bulge in position 20 | |
| V3 | G-C in position 7 | ||
| BVDV-2d | V1 | Shorter V1 loop-size of V1 19 bp; U-A in position 15; GA bulge in position 17; G A bulge in position 18 | |
| BVDV-2e | V1 | G-C in position 12; C-G in position 14; C-G in position 16; G A bulge in position 17; G A bulge in position 18. | |
| V3 | higher V3 loop, C in position 10 | ||
| BVDV-2f | V1 | A-U or A C bulge in position 9; A-U in position 12; U-A in position 16 (exception GA bulge); G A bulge in position 17; G A bulge in position 18 | |
| V3 | higher V3 loop, U or U-A in position 10 | ||
| BVDV-3 genotypes | Locus | Characteristic PNS markers | |
| BVDV-3.1 | V1 | A-U in position 1 (exception G:Y, U U or C U bulges); Y:G in position 8; U-A or C A bulge in position 15; A G, A A, U U or G A bulges, A-U or G:Y in position 18 | |
| V2 | Y:G in position 3 | ||
| V3 | G:Y (exception G G bulge) in position 4; Y:G, A G or U-A in position 8 | ||