CSFV

V1

U-A in position 13 (exception U*G or C-G; C A bulge)

V3

U-A in position 2; C A or U-A in position 7; U or C in position 8 (exception A)

BVDV-1 genotypes

Determinative LVP (V1/14; V2/7; V3/4)

Genotype markers

Additional markers

(PP, LVP, HVP)

BVDV-1a

YG, GY, AU

V1/12 GY/AU; V2/5 GC; V2/7 (exception C C bulge)

BVDV-1b

UA, RY, GC

(b.1V2/7 AU; b.2V2/7 GY)

b.1 V1/14 (exception G A bulge)

V2/7 (exception A C bulge)

V3/4 (exception AU)

b.2 V1/14 (exception A A ; C A and G A bulges)

BVDV-1.3 (D)

CG, AC, AU

(V1/14 exception C A and A G bulges)

BVDV-1.4

CG, AU, GC

V1/12 GY/AU

V3/6 UA

V3/4 (exception AU)

BVDV-1.5 (I)

CG, GY, GC

V3/2 AC

BVDV-1.6 (N, T)

CG, GC, GU

V1/16 AU/UU;

V2/2 CG; V2/6 GY;

V3/3 CG; V3/6 UA; V3/8 UC/AC/GC

BVDV-1.7 (O)

CG, GY, GC

V2/2 UA; V3/9 AU/AA/GC

BVDV-1.8 (C)

CG, GC, AU

(Root A non A)

V1/12 AC (exception C C bulge)

V2/7 (exception AU)

V3/4 (exception AC)

BVDV-1.9 (H)

CG, GC, GC

V1/20 GA; V2/6 CU/UU

BVDV-1.10 (Q)

CG, GC, GC

V1/15 AA or CA (exception species marker); V2/2 UA; V2/5 GC;

V3/9 UC/UU

BVDV-1.11 (E)

CG, GY, GC

V1/17 GA/GG/AG (exception A A bulge and GU);

V2/6 AU/AC/UU;

V3/6 UA;

V3/8 AA/GA (exception A G bulge)

BVDV-1.12 (F, R, S)

12.1

CG, GY, GC

12.1

V3/6 GC V3/8 AU/AC

12.2

CG, AU/GC, GC

12.2

V3/6 GA;V2/7 (exception GC)

BVDV-1.13 (C, J)

CG, GY, GC

(V1/14 exception C A bulge);

V1/16 CR (C-G or C A bulge) V1/17 GA (exception G*U); V2/6 AU (exception A C bulge)

BVDV-1.14 (R)

YG, GY, AU

(Root A non A)

V2/5 AU (exception species marker)

BVDV-1.15 (M)

15.1

CG, GC/AC, GY/AU (Also Root A non A)

15.1

V1/19 GY/GG; V2/2 CG/UA; V2/4 CG/CA (exception G G bulge); V2/5 GC;

V3/9 CC/UC/UU (exception U) V3/4 (exception UA)

15.2

CG, GC, GY/AU

(Also Root A non A)

15.2

V1/19 GY/CU;

V2/4 CG; V2/5 AU (exception species marker);

V3/9 CC/UC