Gene set name

Description

Genes in Overlap (k)

p-value

FDR q-value

NIKOLSKY_BREAST_CANCER_ 8Q23_Q24_AMPLICON

Genes within amplicon 8q23-q24 identified in a copy number alterations study of 191 breast tumor samples.

6

<0.01

<0.01

LIAO_METASTASIS

Genes up-regulated in the samples with intrahepatic metastatic hepatocellular carcinoma (HCC) vs primary HCC.

7

<0.01

<0.01

SHEDDEN_LUNG_CANCER_ POOR_SURVIVAL_A6

Cluster 6 of method A: up-regulation of these genes in patients with non-small cell lung cancer (NSCLC) predicts poor survival outcome.

6

<0.01

<0.01

OXFORD_RALA_OR_RALB_ TARGETS_UP

Genes up-regulated after knockdown of RALA or RALB [GeneiD = 5898; 5899], which were also differentially expressed in bladder cancer compared to normal bladder urothelium tissue.

3

<0.01

0.01

PUJANA_BRCA2_PCC_ NETWORK

Genes constituting the BRCA2-PCC network of transcripts whose expression positively correlated (Pearson correlation coefficient, PCC > = 0.4) with that of BRCA2 [GeneID = 675] across a compendium of normal tissues.

5

<0.01

0.03

KONG_E2F3_TARGETS

Genes up-regulated in MEF cells (embryonic fibroblasts) at 16 hr after serum stimulation and knockdown of E2F3 [GeneID = 1871] by RNAi.

3

<0.01

0.04