| Gene | Poultry manure | Pig slurry | Amended soil | NAIS |
| aadA | 8/8 | 8/8 | 4/8 | 0/8 |
| armA | 0/8 | 0/8 | 0/8 | 0/8 |
| blaCTX-M | 1/8 | 0/8 | 0/8 | 0/8 |
| blaTEM | 7/8 | 0/8 | 3/8 | 0/8 |
| catA1 | 3/8 | 1/8 | 0/8 | 0/8 |
| catA2 | 0/8 | 0/8 | 0/8 | 0/8 |
| mecA | 6/8 | 1/8 | 0/8 | 0/8 |
| qnrB | 4/8 | 0/8 | 0/8 | 0/8 |
| qnrS | 6/8 | 3/8 | 3/8 | 0/8 |
| str | 8/8 | 7/8 | 4/8 | 2/8 |
| sul1 | 8/8 | 8/8 | 5/8 | 0/8 |
| sul2 | 8/8 | 8/8 | 8/8 | 3/8 |
| sul2 (relativea) | 6.2 × 10−3 (1.2 × 10−6 - 2.6 × 10−2) | 5.1 × 10−2 (1.4 × 10−2 - 8.8 × 10−2) | 9.8 × 10−4 (1.7 × 10−4 - 2.0 × 10−3) | 0.3 × 10−4 (0.8 × 10−6 - 0.7 × 10−4) |
| tet(A) | 8/8 | 8/8 | 3/8 | 0/8 |
| tet(B) | 7/8 | 8/8 | 3/8 | 0/8 |
| tet(C) | 3/8 | 8/8 | 3/8 | 0/8 |
| tet(M) | 4/8 | 8/8 | 1/8 | 0/8 |
| tet(Q) | 7/8 | 7/8 | 5/8 | 0/8 |
| vanA | 5/8 | 0/8 | 0/8 | 0/8 |
| Mean number of genes/sample | 11.6 (9 - 14) | 9.4 (8 - 11) | 5.2 (1 - 10) | 0.6 (0 - 2) |