| Gene | Sequence (5’-3’) | Function | Annealing temperature (˚C) | Amplicon size (bp) | Reference |
| aadA | F: GCAGCGCAATGACATTCTTG | F | 60 | 282 | [35] |
| R: ATCCTTCGGCGCGATTTTG | R | ||||
| armA | ATTCTGCCTATCCTAATTGG | F | 55 | 315 | [36] |
| ACCTATACTTTATCGTCGTC | R | ||||
| blaCTX-M | TTTGCGAT GTGCAGTACCAGTAA | F | 60 | 591 | [37] |
| CGATATCGTTGGTGGTGCCATA | R | ||||
| blaTEM | AAAGATGCTGAAGATCA | F | 44 | 425 | [38] |
| TTTGGTATGGCTTCATTC | R | ||||
| catA1 | GGTGATATGGGATAGTGTT | F | 60 | 349 | [39] |
| CCATCACATACTGCATGATG | R | ||||
| catA2 | GATTGACCTGAATACCTGGAA | F | 60 | 567 | |
| CCATCACATACTGCATGATG | R | ||||
| mecA | CATTGATCGCAACGTTCAATTT | F | 60 | 99 | [40] |
| TGGTCTTTCTGCATTCCTGGA | R | ||||
| TGGAAGTTAGATTGGGATCATAGCGTCAT | probea | ||||
| qnrB | GGMATHGAAATTCGCCACTG | F | 62 | 263 | [41] |
| TTYGCBGYYCGCCAGTCGAA | R | ||||
| qnrS | GACGTGCTAACTTGCGTGAT | F | 62 | 118 | |
| TGGCATTGTTGGAAACTTG | R | ||||
| tet(A) | GCGCTNTATGCGTTGATGCA | F | 62 | 387 | [42] |
| ACAGCCCGTCAGGAAATT | R | ||||
| tet(B) | TACGTGAATTTATTGCTTCGG | F | 60 | 206 | [43] |
| ATACAGCATCCAAAGCGCAC | R | ||||
| tet(C) | CTTGAGAGCCTTCAACCCAG | F | 66 | 418 | [44] |
| ATGGTCGTCATCTACCTGCC | R | ||||
| tet(M) | ACAGAAAGCTTATTATATAAC | F | 60 | 171 | |
| TGGCGTGTCTATGATGTTCAC | R | ||||
| tet(Q) | AGAATCTGCTGTTTGCCAGTG | F | 63 | 169 | [45] |
| CGGAGTGTCAATGATATTGCA | R | ||||
| str | AATGAGTTTTGGAGTGTCTCAACGTA | F | 60 | 147 | [46] |
| AATCAAAACCCCTATTAAAGCCAAT | R | ||||
| sul1 | CGCACCGGAAACATCGCTGCAC | F | 63 | 163 | [47] |
| TGAAGTTCCGCCGCAAGGCTCG | R | ||||
| sul2 | TCCGGTGGAGGCCGGTATCTGG | F | 63 | 191 | |
| CGGGAATGCCATCTGCCTTGAG | R | ||||
| vanA | GAAATCAACCATGTTGATGTAGCA | F | 61 | 572 | [48] |
| TTTGCCGTTTCCTGTATCCGT | R | ||||
| 16S rDNA | ATGGCTGTCGTCAGCT | F | 62 | 352 | [49] |
| ACGGGCGGTGTGTAC | R |