| Primer Name | Primer Sequence | Tm (˚C) | Amplicon Size (nt) | Gene | Source |
| 27F | AGAGTTTGATCCTGGCTCAG | 50 | 740 | Bacterial 16S rRNA | [23] |
| 785R | ACTACCRGGGTATCTAATCC | ||||
| PSF | GGGATTAGATACCCCWGTAGTCCT | 53 | 735 | Phytospecific 16S rRNA | [25] |
| UR | ACGGYTACCTTGTTACGACTT | ||||
| CYA359F | GGGGAATYTTCCGCAATGGG | 50 | 426 | Cyanobacterial 16S rRNA | [24] |
| CYA781R | GACTACWGGGGTATCTAATCCCWTT | ||||
| MSF | ATCCAGCAGTTGAGCAAGC | 58 | 1369 | mcyA | [26] |
| MSR | TGCAGAAAACTCCGCAGTTG |