Location/type | H. debilis | Common sites in H. debilis | Unique site in H. debilis | H. niveus | Common sites in H. niveus | Unique site in H. niveus | H. praecox | Common sites in H. praecox | Unique sites in H. praecox | ||||||
C | I | C | I | C | I | C | I | C | I | C | I | ||||
Protein coding transcripts | 175 | 175 | 173 | 2 | 2 | 173 | 174 | 160 | 13 | 14 | 170 | 179 | 167 | 3 | 12 |
First codon position | 54 | 54 | 54 | 0 | 0 | 56 | 55 | 52 | 4 | 3 | 55 | 56 | 55 | 0 | 1 |
Second codon position | 102 | 100 | 100 | 2 | 0 | 99 | 93 | 90 | 9 | 3 | 98 | 99 | 96 | 2 | 3 |
Third codon position | 19 | 21 | 19 | 0 | 2 | 18 | 26 | 18 | 0 | 8 | 17 | 24 | 16 | 1 | 8 |
Creation of start codon | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Substitution of start codon | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Creation of stop codon | 1 | 1 | 1 | 0 | 0 | 2 | 2 | 2 | 0 | 0 | 1 | 1 | 1 | 0 | 0 |
Substitution of a stop codon | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Non-synonymous substitutions | 156 | 154 | 154 | 2 | 0 | 154 | 147 | 141 | 13 | 6 | 152 | 153 | 150 | 2 | 3 |
Synonymous substitutions | 19 | 21 | 19 | 0 | 2 | 19 | 27 | 19 | 0 | 8 | 18 | 26 | 17 | 1 | 9 |
Non-protein coding transcripts | 195 | 202 | 185 | 10 | 17 | 262 | 262 | 203 | 59 | 59 | 201 | 202 | 169 | 32 | 33 |
tRNA | 3 | 3 | 3 | 0 | 0 | 3 | 3 | 2 | 1 | 1 | 3 | 3 | 3 | 0 | 0 |
rRNA | 1 | 0 | 0 | 0 | 0 | 3 | 13 | 3 | 0 | 10 | 3 | 3 | 2 | 1 | 1 |
Long noncoding RNA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Intergenic region | 191 | 199 | 182 | 9 | 17 | 256 | 246 | 198 | 58 | 48 | 195 | 196 | 164 | 31 | 32 |
Total no of sites | 370 | 377 | 358 | 12 | 19 | 435 | 436 | 363 | 72 | 73 | 371 | 381 | 336 | 35 | 45 |