| Name | Sequence (5' → 3' ) | Purpose | Reference |
| Ccs5up_F-762 | AGGAATACTACAAGGCCTCCA | diagnostic PCR |
|
| Ccs5up_F-1671 | GATGAAAATTTGGGCTCCGC | diagnostic PCR |
|
| Ccs5up_F-2393 | TGAAACTGAATAAGCTGCGACT | diagnostic PCR |
|
| Ccs5up_F-2745 | ACTAATACAGCTGCCGTCCA | diagnostic PCR |
|
| Ccs5up_F-3080 | GCCGCCCATTCTTTCTAGTC | diagnostic PCR |
|
| Ccs5up_F-3784 | ACGGCAACTCAACACAAGTG | diagnostic PCR |
|
| Ccs R+1494 (CCS-da) | AAGGCTCTCTATTGCTAGATTGCCCAG | diagnostic PCR and RT-PCR | Lang et al. (2004) [13] |
| Ccs5del F1 | TGAGAAGTGTCCTTGAGGAAGA | multiplex PCR to distinguish the large deletion |
|
| Ccs5del F2 | TCTGGTGCTTTTAGAGTTTGGA | multiplex PCR to distinguish the large deletion |
|
| Ccs5del R | TTTAACCAAGGGGACAGTGC | multiplex PCR to distinguish the large deletion |
|
| Ccs F+174 | ACCCACATCAAAGCCAGAGT | RT-PCR |
|
| Ccs R+352 (CCS-534a) | ACATGGAAAGTAGTAAAGG | RT-PCR | Lang et al. (2004) [13] |
| Ccs F+1284 (CCS-1484a) | GGAAGGTACTAGGAGATTGTT | RT-PCR | Lang et al. (2004) [13] |
| ccs3dCAPS F | GTACTGGCTGAGGCCATCGT | dCAPS for ccs-3 |
|
| ccs3dCAPS Rb | AAACAATCTCCTAGTACCTTCCAAATCAAGCTTCAACAGA | dCAPS for ccs-3 |
|
| ubiqitin-F | TGTGTCTCAACATTCTTCGTGA | RT-PCR | Stellari et al. (2010) [27] |
| ubiqitin-R | ATACAGCAGCTGCGTCGT | RT-PCR | Stellari et al. (2010) [27] |