| Primer | Oligonucleotide sequence (5'-3') | Conc (µM) | Amplicon size (bp) | Specificity |
| Type I-F | GCTTTAAAGAGTGTCGTTACAGG | 0.048 | 613 | SCCmec I |
| Type I-R | GTTCTCTCATAGTATGACGTCC |
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| Type II-F | CGTTGAAGATGATGAAGCG | 0.032 | 389 | SCCmec II |
| Type II-R | CGAAATCAATGGTTAATGGACC |
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| Type III-F | CCATATTGTGTACGATGCG | 0.04 | 280 | SCCmec III |
| Type III-R | CCTTAGTTGTCGTAACAGATCG |
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| Type IVa-F | GCCTTATTCGAAGAAACCG | 0.104 | 776 | SCCmec IVa |
| Type IVa-R | CTACTCTTCTGAAAAGCGTCG |
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| Type IVb-F | TCTGGAATTACTTCAGCTGC | 0.092 | 493 | SCCmec IVb |
| Type IVb-R | AAACAATATTGCTCTCCCTC |
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| Type IVc-F | ACAATATTTGTATTATCGGAGAGC | 0.078 | 200 | SCCmec IVc |
| Type IVc-R | TTGGTATGAGGTATTGCTGG |
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| Type IVd-F | CTCAAAATACGGACCCCAATACA | 0.28 | 881 | SCCmec IVd |
| Type IVd-R | TGCTCCAGTAATTGCTAAAG |
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| Type V-F | GAACATTGTTACTTAAATGAGCG | 0.6 | 325 | SCCmec V |
| Type V-R | TGAAAGTTGTACCCTTGACACC |
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| MecA147-F | GTG AAG ATA TAC CAA GTG ATT | 0.046 | 147 | mecA |
| MecA147-R | ATG CGC TAT AGA TTG AAA GGA T |
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