| Genetic linkage (Lk) | Microarray analysis (CMA) | Gene-locus Association (A) | Gene sequence (M) | Gene expression (E) |
| p [46] | p36- [49] p34.2- [50] | p33 MTF1 [55] | ||
1 | q21.1 [47] | q21.1 ± RBM8A [51] [52] |
| ||
| q23q24.2 [48] | q23.3q24.2-(t) [53] | |||
| q41q42 ± [54] | ||||
| p [56] | p15p16.3- NRXN1 [58] [59] | p16.3 NRXN1t [70] | ||
| p13 RAB11FIP5t [71] |
| |||
| q21q23 -/- SCN7A [60] |
| |||
2 | q [57] | q23.1 ± EPC2 [61] | q24q33 STK39 [66] | q24.2 SLC4A10t [72] | |
| q24 SLC25A12 [67] | q24.3 SCN1Am [73] | |||
| q32 [57] | q34q35- MAP2 [62] | q31q32 ITGA4 [68] DLX1/2 [69] | q31.1 RAPGEF4m [74] | q31 GAD1 [76] |
| q35-PAX3 [63] q37 [64] [65] | q37.3 CENTG2m [75] | q34q35 MAP2 [62] | ||
| p26.2- OXTR [77] p26 ± CNTN4 [78] p24- [79] | p26.2OXTRm [77] | p26.2 OXTR [83] | ||
3 | p14.2 ± FHIT [4] | p26p25 CNTN4t [81] |
| ||
| q24 -/-SLC9A9, DIA1 [60] | q21q22 MBD4m [82] | |||
| q25q27 [46] | q29- PAK2 DLG1 [80] | |||
4 | p12 GABRA2 GABRA4 [84] |
| |||
| q28.3 -/- PCDH10 [84] | q21q25 EIF4Et [85] | |||
| p15.2- [79] p13- NIPBL SLC1A3 [87] | p15.2p14.1 SEMA5A [91] CDH9, CDH10 [92] SLC6A3 [93] |
| p13p15 SEMA5A [91] SLC1A3 [95] | |
5 | q [86] | q14q21- RASA1, MEF2C [88] | q22.2 APC [86] |
| q12 PDE4D [96] |
| q35.2/.3 ± NSD1 [89] [90] | q31 PITX1 [94] | q33 AMPA1 [95] | ||
| q34q35.1 GABRB2 [84] | q34q35 GABRA1 [84] | |||
| p23- [4] p21.3 -/- RNF8 [4] | p21.3p21.2 GLO1 [97] | |||
6 | q21 [56] | q15 GABRR2 [84] |
| ||
| q16.3 GRIK2 [98] | q21q23.2 GJA1 [99] | |||
| p22.1+/t ACTB [104] [105] | p15.3 HOXA1* [109] | |||
| p21.1- MACC1 [4] |
| |||
| q21.13 [60] | q11- [106] q11.23+ [62] | q22 RELN [110] | q11.2 KIAA0442t [116] | q22 RELN [121] |
7 | q22 [100] | q21q22.3- [107] | q31 FOXP2* [111] MET [112] | q31 METm [117] | |
| q22q32 [101] | q31-t [108] | q35q36 CNTNAP2 [113] | q31.3 CADPS2m [118] | |
| q31.32 [100] | q36 EN2 [114] | q31.1q31.3 ST7t [119] |