| Category | Scaffold ID | Forward Primer ID | Forward Primer Sequences (5'-3') | Forward Primer Tm (˚C) | Reverse Primer ID | Reverse Primer Sequences (5'-3') | Reverse Primer Tm (˚C) | Expected Allele Size (bp) | MS Unit Size | Perfect or Imperfect | Simple Notation |
| B | Ba00002 | 00002_358935_F | tttgtcagtgggaaacaatctg | 60.0 | 00002_358935_R | gtggtgtgtgtgtttgtacgtg | 59.9 | 140 | 2 | perfect | (CA)14 |
| B | Ba00003 | 00003_495686_F | gtgtggaagcaacaagcaaata | 60.2 | 00003_495686_R | tggatttgggtacaggtaaagg | 60.1 | 321 | 2 | perfect | (AC)36 |
| B | Ba00004 | 00004_886445_F | agcatctgtgtctgcataatgg | 60.2 | 00004_886445_R | cgacaatgtgacatgtttgttg | 59.9 | 148 | 2 | perfect | (CA)12 |
| B | Ba00005 | 00005_610364_F | caaaggggattttagtctgctg | 60.1 | 00005_610364_R | cttgccaaaaacctcgacttac | 60.2 | 141 | 2 | imperfect with gaps | (GT)16 |
| B | Ba00006 | 00006_761447_F | gcaagcatatggcacatttaga | 60.1 | 00006_761447_R | atcttgctcctcctcttcctct | 60.0 | 130 | 2 | imperfect with no gaps | (TG)42 |
| B | Ba00007 | 00007_770851_F | gccccatatgtacatggagttt | 60.0 | 00007_770851_R | gggcgttattctagtgatgtttg | 59.9 | 185 | 2 | perfect | (AC)21 |
| B | Ba00008 | 00008_803992_F | catttggttttctttggtccat | 60.1 | 00008_803992_R | tccaaaaccagaaaggacactt | 60.0 | 128 | 2 | imperfect with no gaps | (AC)15 |
| B | Ba00009 | 00009_514635_F | tgtgcttcgtaaacacaacctc | 60.2 | 00009_514635_R | gaggctgcaggatatgaatagg | 60.1 | 111 | 2 | imperfect with no gaps | (AC)21 |
| B | Ba00010 | 00010_781278_F | ggtgaattcaattgccagtttag | 59.9 | 00010_781278_R | ccattacttacttctcgcccag | 60.1 | 106 | 2 | perfect | (CA)14 |
| B | Ba00011 | 00011_657238_F | atcacgtttatttagcccgaga | 60.0 | 00011_657238_R | atgagaccgttaacattttgcc | 60.2 | 141 | 2 | perfect | (AC)16 |
| B | Ba00013 | 00013_638192_F | tgacctcttcccaatggactat | 59.8 | 00013_638192_R | gctcagtctctggtttcctgtc | 60.4 | 142 | 2 | imperfect with no gaps | (AC)19 |
| B | Ba00014 | 00014_385141_F | gattccacatggtcagcttgta | 60.0 | 00014_385141_R | ctccaaaaggaaagtcaaccac | 60.0 | 139 | 2 | perfect | (CA)22 |
| B | Ba00015 | 00015_721830_F | aagcgctactttcaggtgagtc | 60.1 | 00015_721830_R | ctcactactcccacctggagat | 59.6 | 138 | 2 | perfect | (CA)13 |
| B | Ba00016 | 00016_658769_F | tttaatttgtcacccgtctgtg | 59.9 | 00016_658769_R | catgtctccatattttccgtga | 59.8 | 121 | 2 | perfect | (AC)13 |
| B | Ba00017 | 00017_135995_F | cactgttgctctgggtaaaggt | 60.6 | 00017_135995_R | ccgggtttgatatattgtgctt | 60.1 | 150 | 2 | perfect | (TG)16 |
| B | Ba00018 | 00018_365575_F | ttcagttatgggtctgggctat | 59.9 | 00018_365575_R | ctgaaacatgtatggttgtggg | 60.2 | 143 | 2 | perfect | (AC)15 |
| B | Ba00019 | 00019_259174_F | gagtgatggcctggatagactc | 60.1 | 00019_259174_R | gtctgcctgtctgtctgttcac | 60.0 | 123 | 2 | imperfect with no gaps | (CA)25 |
| B | Ba00020 | 00020_291940_F | tagcatatttgtattcgggcac | 59.0 | 00020_291940_R | ccctgaagtcagtcaaggtaca | 59.3 | 116 | 2 | perfect | (AC)17 |
| B | Ba00021 | 00021_81471_F | cttgtggatggcacagagatag | 59.8 | 00021_81471_R | caagtcacgcataaaaaccaga | 60.2 | 140 | 2 | imperfect with no gaps | (TG)24 |
| A | Ba00022 | 03538_117_F | tgatgttttcacagagaaccaga | 59.8 | 03538_117_R | cggttcaggtatgtcagagtga | 60.2 | 177 | 2 | perfect | (TG)13 |
| B | Ba00022 | 00022_661885_F | agataccgcagggattatctga | 60.0 | 00022_661885_R | aaaataaaaatcagcccacacg | 60.2 | 146 | 2 | imperfect with gaps | (TG)25 |
| B | Ba00023 | 00023_682414_F | tgtccaatatagcaagcagtgg | 60.2 | 00023_682414_R | gctgtggtatttacatttgcga | 60.0 | 135 | 2 | imperfect with gaps | (TC)22 |
| B | Ba00026 | 00026_267152_F | acagcccctattcacaatgagt | 59.9 | 00026_267152_R | gtgagccttcacaaacaacaag | 59.8 | 107 | 2 | imperfect with gaps | (TG)32 |
| B | Ba00027 | 00027_603499_F | tctgacaccaccatatagcacc | 59.9 | 00027_603499_R | tggagacgacgatcctaatgta | 59.6 | 400 | 2 | perfect | (CA)21 |
| B | Ba00028 | 00028_464941_F | aaactgtgggacatgttctttt | 57.6 | 00028_464941_R | cagaaacacaaccctaaccctc | 59.9 | 201 | 2 | perfect | (CA)21 |
| B | Ba00029 | 00029_643815_F | tgtgtgtgtgtgaatgtgtgtg | 60.0 | 00029_643815_R | taatccctcgagacgtgaattt | 60.0 | 102 | 2 | perfect | (TG)15 |
| B | Ba00030 | 00030_319912_F | ttgtccctggagaaaagtgttt | 60.0 | 00030_319912_R | acatgggaacacataggacaca | 60.2 | 128 | 2 | perfect | (TG)21 |
| B | Ba00031 | 00031_368460_F | ttcctctgtgaactgaagcaga | 60.2 | 00031_368460_R | gagatgaggcagaacatctgtg | 59.9 | 101 | 2 | imperfect with no gaps | (AC)21 |
| B | Ba00032 | 00032_435309_F | gccagaggaaaagacagagaaa | 60.0 | 00032_435309_R | tcaggtaggacagctcacaaaa | 59.9 | 103 | 2 | perfect | (GT)14 |