| NCBI code | Viral pathogens | Coverage rate with sRNA tags (%) | Dushicun | WangJiayuan | XiaJiangcun | Yangducun |
| NC_003347.1 | Grapevine fleck virus | 86.6 - 90.2 | + | + | + | + |
| NC_031340.1 | Grapevine geminivirus A | 98.2 - 99.6 | + | + | + | + |
| NC_004667.1 | Grapevine leafroll-associated virus 3 | 91.6 - 98.2 | + | + | + | + |
| NC_039072.1 | Grapevine fabavirus | 94.2 - 96.7 | + | - | + | + |
| NC_011106.1 | Grapevine virus E | 90.5 | - | - | - | + |
| NC_001948.1 | Rupestris stem pitting associated virus | 93.2 | - | - | - | + |
| NC_015782.1 | Grapevine pinot gris virus | 90.2 | + | - | - | - |
| NC_001351.1 | Hop stunt viroid | 95.7 - 97.0 | + | + | + | + |
| NC_001920.1 | Grapevine yellow speckle viroid 1 | 99.5 - 99.7 | + | + | + | + |
| AF_434679.1 | Citrus viroid II | 93.0 - 95.0 | + | + | + | + |
| NC_003612.1 | Grapevine yellow speckle viroid-2 | 99.5 - 99.7 | + | + | + | + |
| AY513267.1 | Citrus cachexia viroid | 85.3 - 94.3 | - | + | - | + |