Viruses/Viroids

Primer name

Sequence (5' - 3')

Tm

(˚C)

Position in genome and Size (bp)

Referenced from

grapevine fleck virus

GFkV-CP-F

TGCCGCCTCTCCGTCTGCTGA

58

6435 - 6729 (295)

NC003347.1

GFkV-CP-R

GGCGGAGGAGGCAGTGGGTTG

grapevine leave roll-associated virus 3

GLRaV3-CP-F

CGGCACAAGGAAAATTTAGT

58

13,345 - 13624 (280)

NC004667.1

GLRaV3-CP-R

ATTCCCTTGCCCATAGTCTTC

grapevine geminivirus A

GGVA-AC-F

CAGTATCTTCTGAGGCACGA

58

1715 - 2417 (703)

NC031340.1

GGVA-AC-R

GCTAACGACGCTTATGCTGA

GGVA-AV-F

AAGAGGAAATCTTTCGCACC

58

464 - 1031 (568)

NC031340.1

GGVA-AV-R

AATTGACTCGATTACGACCAG

hop stunt viroid

HSVd-F

CGAGAGGCGTAGGAGAGAGG

58

105 - 282 (178)

NC001351.1

HSVd-R

GCGGCAGAGGCTTAGATAGAC

grapevine yellow speckle viroid 1

GYSVd1-F

CTCCGGATCTTCTTGCTTGTG

58

2 - 284 (283)

GU170805.1

GYSVd1-R

GAGACCAAGTCCGCTCGAC

grapevine yellow speckle viroid 2

GYSVd2-F

AGATGCCTCCGCTAGTCGAG

58

242 - 130 (250)

NC003612.1

GYSVd2-R

GCCAGCTCTTCGGAATGCACC