| 2 | 35,450,160 | RM3850 | SSR | AAGTTGAGAATGAGGGACAA | TTCGGAAGTGAAAAGGTAAT | McCouch et al. (2002) |
| 2 | 35,729,140 | RM3274 | SSR | GCTGCTGCTGCTACAGTTTG | GCGAGCTCCAGCATTTAAAC | McCouch et al. (2002) |
| 2 | 35,160,161 | RM208 | SSR | TCTGCAAGCCTTGTCTGATG | TAAGTCGATCATTGTGTGGACC | Chen et al. (1997) |
| 3 | 8,170,550 | RM5639 | SSR | GGAAGAACAGAGTTGCTCGG | GTGCCATTTATTTCCGTCCC | McCouch et al. (2002) |
| 3 | 1,437,206 | RM3372 | SSR | GAGCGACCAAAGAATCCAAG | CCACGGGGAGCTGATGAAG | McCouch et al. (2002) |
| 3 | 5,971,990 | RM3467 | SSR | ATAATGGCAGGGTTGTCTCG | CTCGGTGAGCCTCCTACAAC | McCouch et al. (2002) |
| 3 | 16,285,889 | QSTS125 | Indel | TTGAATCAATCACACATCTTATTCAG | TCCATATGGCCCAACATAAAC | This study |
| 3 | 28,479,745 | RM1350 | SSR | CGCCCTAGTAGATAGGTAATTG | AAATCAGCAAGAAAGCTCTG | McCouch et al. (2002) |
| 4 | 24,222,895 | RM3785 | SSR | ACCTTTTCTTGGCTTGAGGG | GCTTTTGCTACTTTTGGGGG | McCouch et al. (2002) |
| 4 | 24,277,170 | RM7051 | SSR | CTCGATGAGCTTGGCGTC | TTCAGTGTTCATCGCCTCTG | McCouch et al. (2002) |
| 4 | 5,275,427 | QSTS132 | Indel | TTTCGATGCTGTCAATCTACG | TCGATCCATCCACTTCCTTC | This study |
| 4 | 13,164,721 | QSTS134 | Indel | CTTGTATTGCGTGCAGGATG | TTGGCTTCAATGCATACACC | This study |
| 4 | 31,466,041 | QSTS141 | Indel | CCATGCATCCTCCTGTTCC | CTGTTGATGGGTCCCAATTC | This study |
| 4 | 31,485,856 | QSTS142 | Indel | AGCTTTTTGGGTGATGTTGG | GGATGCTCTTTCTCCACCAC | This study |
| 5 | 9,320,757 | RM6836 | SSR | TTGTTGTATACCTCATCGAC | AGGGTAAGACGTTTAACTTG | McCouch et al. (2002) |
| 5 | 82,104 | RM3529 | SSR | CGCGCCACCTCGATATATAC | GCTCAGGTTAACCAAGGTGG | McCouch et al. (2002) |
| 5 | 4,311,860 | QSTS145 | Indel | GAGACGGTCCCAACAAAGAC | CGTTTTAAACCATCCTTAGACG | This study |
| 5 | 17,292,400 | QSTS152 | Indel | GAAACTCGGCCAATTGTAAC | TGACATGGCTGTCTTCAACC | This study |
| 6 | 3,168,368 | RM204 | SSR | GTGACTGACTTGGTCATAGGG | GCTAGCCATGCTCTCGTACC | Chen et al. (1997) |
| 6 | 10,151,590 | QSTS157 | Indel | TGCTGTCATGCCAACTTACC | AAATGGCAGCATCTTCAAGC | This study |
| 6 | 23,054,814 | QSTS171 | Indel | TGAAAACCGTGTCACTGTCC | GGGGCTCTAATCACCTCCAG | This study |
| 6 | 25,612,879 | RM6395 | SSR | GGCTTCGGCTTCTGAACTAGC | CGACTAAGCAGCAGTAACAATCTCG | McCouch et al. (2002) |
| 6 | 28,563,631 | RM3307 | SSR | CAGTGCTCTCGAACATGGAG | CTGCATTGTAAACGGTCGAG | McCouch et al. (2002) |
| 7 | 1,186,748 | RM6697 | SSR | GCAAGATCCAGTCGATTTGG | ATAACATGAGCATCTCCCCG | McCouch et al. (2002) |
| 7 | 23,596,003 | RM5847 | SSR | TGAGATGAGAGATAGACTCC | AACAGATGAAGGCTATTTTA | McCouch et al. (2002) |
| 7 | 4,692,609 | RM6872 | SSR | CACCACGATATCCACCTCTAGC | CCTAGGATGAACACTGATGATGG | McCouch et al. (2002) |