Chr.	Position^a	Marker name	Marker type	Forward primer sequence	Reverse primer sequence	Reference
1	548,641	RM3148	SSR	GCTTTGGTATTTGCAGGTTCACG	CTATTGCTCGAACACTTTGCTTCTCC	McCouch et al. (2002)
1	2,575,209	QSTS60	Indel	AAAGCTCTGAGTGGCTTTGC	TTGGTTTGTCGATATGTTCAGC	This study
1	4,635,844	QSTS76	Indel	GCGAAAACACAATGCAAAAAG	GTGTGGGGGAAGCAAGAG	This study
1	23,968,523	RM5	SSR	TGCAACTTCTAGCTGCTCGA	GCATCCGATCTTGATGGG	Panaud et al. (1996)
1	26,035,809	RM3475	SSR	GTCGGTTTGCCTAGTTGAGC	TTCCTCGGTGTATGGGTCTC	McCouch et al. (2002)
1	30,718,595	QSTS82	Indel	TAACAACGGGGGCCTAGATG	GCCGGTGGTGAAGACGAC	This study
1	40,246,974	RM3520	SSR	GAGGCTATATGCTCATGCTC	AAACCTGCAAATGCACAG	McCouch et al. (2002)
2	1,878,328	RM7562	SSR	AGACATGCCAATGTGATGGC	TCGGTAGTATGGGGCTTGTC	McCouch et al. (2002)
2	4,414,049	RM3865	SSR	AACCATGGACAGTTGAACAC	CTCCGACAAGAACTTCCTC	McCouch et al. (2002)
2	5,477,492	RM6378	SSR	CTGATCATCTCATGCCTCCTACG	TCCATCTCCCAATATGACCAACC	McCouch et al. (2002)
2	5,852,749	QSTS88	Indel	GCCATGGAAAAGAAAAGCTG	TGATCGATGGATAGCCACAC	This study
2	7,112,707	QSTS89	Indel	TTTTGCACGGTTTTGTATGG	AACCGATGTCTGCATCCAAG	This study
2	9,984,944	QSTS90	Indel	GAGGAGGAGGAACGAAGAGG	GTTCGCTCCTGACCTTCG	This study
2	9,998,681	QSTS91	Indel	GAGGAGGAGGAACGAAGAGG	GTTCGCTCCTGACCTTCG	This study
2	10,186,627	RM3501	SSR	CTACAATGATTCCATGCCTGTCC	TCCGGCTCAAGCTACAGTTAAGG	McCouch et al. (2002)
2	17,297,690	QSTS95	Indel	TGAGGACAAGCATGTGAAGG	CAATGGACGCTAGTGGAACC	This study
2	18,744,542	QSTS96	Indel	GCTCGTGTTCGTGCATCTATC	GCAACAACGAGAACGAGAAC	This study
2	20,751,269	QSTS103	Indel	TTCGTTTCGAGTAACAAAGCAC	GTGTTAGGGAAGCACATTCG	This study
2	24,254,973	QSTS105	Indel	AATATTGTAAACAAAAACTCAAAATCC	TTCTTCTCTCTCCGCCTTCC	This study
2	24,518,130	QSTS109	Indel	AATATAGTTTGGTCAAAAGAACAAAAG	CGGATAATCTTGATGAGTGAACC	This study
2	24,531,197	QSTS110	Indel	TGTTGGTGGTCAGTTCAACTTC	TCCCGCCTTCCATTTATTAC	This study
2	24,656,209	QSTS111	Indel	CGGAGGCAGAGTAAGAATCG	CAATCCCGATTGTCGGATAC	This study
2	32,812,348	QSTS114	Indel	GAAAATTTGCATTCACTCCTACC	TTGAAAAACACGGGAATTTTATAG	This study
2	33,019,362	RM6733	SSR	TCCATGTGCACAATCCAATTCC	GTGACGGCATGAGAGTGTTTGTAGG	McCouch et al. (2002)
2	33,254,219	QSTS115	Indel	CGCAGTGGCTATAACCCAAG	CCGCATTAGAATCCTTCTCG	This study
2	34,676,703	RM213	SSR	ATCTGTTTGCAGGGGACAAG	AGGTCTAGACGATGTCGTGA	Chen et al. (1997)
2	35,424,303	RM2265	SSR	AACTGACCGTATATTAGCCA	TGACCGCCTCTATTATATTG	McCouch et al. (2002)