Study

Phylegenetic depth

Eupolypods/

Ferns sampled

Characters used

Dating methods

Eupolypods/Ferns Fossils used

Du et al. [9]

Polypodiales

162/214

Plastid 84 protein-coding genes and four rRNA genes,76 448 bp

penalized likelihood (treePL), Bayesian inference (BEAST), three root age constraints

node calibrations

6/14

Qi et al. [6]

Vascular plants: ferns, lycophytes, seed plants

70/129

935, 501, 348, 267 and 146 nuclear gene sets from transcriptomes

penalized likelihood (treePL)

node calibrations

4/17

Rothfels et al. [5]

Ferns, seed plants

31/73

25 nuclear loci 35 877 bp from transcriptomes

Bayesian methods (MrBayes version 3.2.2)

second node calibrations, 2/12

Regalado et al. [8]

Eupolypods

199/203

Three plastid genes (rbcL, atpA, and atpB; 3826 bp)

Rating dating, i.e., using the standard substitution rate for plastid DNA

No calibrations

0/0

Testo and Sundue [7]

Ferns, lycophytes

2468/3973

Six chloroplast markers (atpB, rbcL, rps4 gene, rps4-trnS IGS, trnL gene, trnL-trnF IGS)

Penalized likelihood (treePL)

node calibrations

7/26

Schuettpelz and Pryer [4]

Leptosporangiate ferns

242/400

Three plastid genes (rbcL, atpA, and atpB; >4000 bp)

Penalized likelihood in r8s version 1.71

node calibrations

5/24

Pryer et al. [2]

Vascular plants: ferns, lycophytes, seed plants

6/51

Four genes (plastid rbcL, atpB, rps4, and nuclear 18S rDNA)

Penalized likelihood in r8s version 1.60

node calibrations

1/21

Schneider et al. [3]

Ferns, seed plants

19/42

Two plastid genes (rbcL, rps4)

Penalized likelihood in r8s version 1.60

node calibrations

2/14

This study

Eupolypods

214/218

Three plastid genes (rbcL, atpA, and atpB; 3841 bp)

Bayesian Inference (MrBayes version 3.2.7a)

Tip calibrations

9/9