| Primer Name | Sequence (5' → 3') | Length | Species | Origin |
| R: GTTTGTTGCAATAGTCCCATCACTGC | EST-SSRs | |||
| CPSCT012 | F: ACGGGAGACTTTCCCAGAAG | 156 | Prunus salicina | Mnejja M et al. 2004 |
| R: CTTCTCGTTTCCTCCCTCCT | EST-SSRs | |||
| DY640364 | F: ACAACTCTTTCTGGGTTCATTGCT | 228 - 238 | Cerasus.jamasakura | Yoshiaki et al. 2009 |
| R: GTTTAAAACTCGTATCGTTCCCAAGGGT | EST-SSRs | |||
| DY652293 | F: ATACTTCGCGAAAATCACAAATCG | 297 - 300 | Cerasus.jamasakura | Yoshiaki et al. 2009 |
| R: GTTTCCACGAGAAGAAGACCGTGAGAAT | EST-SSRs | |||
| EMPA022 | F: CGATCTCTCTTCTCTTCGCTTC | 161 | Cerasus avium | Clarke J B et al. 2009 |
| R: CCACCCAAACCTCTCAAACC | genomic cDNA | |||
| EMPA026 | F: ATTGAAAAAGCCAAAGAGCG | 219 | Cerasus avium | Clarke J B et al. 2009 |
| R: TTCACGGTTTGAAGCAAGTG | genomic cDNA | |||
| EMPA027 | F: GCCAACACCCAAATGGTTAG | 210 | Cerasus avium | Clarke J B et al. 2009 |
| R: CTCTCCACGGTCTTGCTTTC | genomic cDNA | |||
| EMPAS02B | F: CTACTTCCATGATTGCCTCAC | 131 - 145 | Cerasus avium | Vaughan S P et al. 2004 |
| R: AACATCCAGAACATCAACACAC | genomic cDNA | |||
| M13B | F: AAGTGTGGGAGTCGGTGTCG | 172 - 195 | Prunus.persica (peach) | Yamamoto et al. 2002 |
| R: GCTCAATTTCGCTGCTTCCT | cDNA | Ohta et al. 2005 | ||
| PBBCT34 | F: CTACCTGAAATAAGCAGAGCCAT | 228 | Prunus persica | Dirlewanger E et al. 2002 |
| R: CAATGGAGAATGGGGTGC | genomic cDNA | |||
| PCEGA25 | F: GCAATTCGAGCTGTATTTCAGATG | 145 - 198 | Sour cherry | Cantini et al. 2001 |
| R: CAGTTGGCGGCTATCATGTCTTAC | genomic cDNA | |||
| PCHGMS1 | F: GGGTAAATATGCCCATTGTGCAATC | 194 | Prunus persica | Sosinski B et al. 2000 |
| R: GGATCATTGAACTACGTCAATCCTC | genomic cDNA | |||
| PCHGMS3 | F: ACGCTATGTCCGTACCATTCCCATG | 170 - 230 | Prunus.persica (peach) | Sosinski et al. 2000 |
| R: CAACCTGTGATTGCTCCTATTAAAC | genomic cDNA | Downey L. et al. 2000 | ||
| UDP96-018 | F: TTCTAATCTGGGCTATGGCG | 232 - 271 | Prunus.persica (peach) | Cipriani G. et al. 1999 |
| R: GAAGTTCACATTTACGACAGGG | genomic cDNA | Tesolin R. et al. 2000 |