Group

Primer/probe

Primer/probe sequence (5'-3')

Length (bp)

Covered genotype

Uncovered genotype

Set 1

p72-1F

ATCCGATCACATTACCTA

108

I, II, VII, VIII, XI, XII, XIII, XIV, XV, XVI, XVII, XVIII, XXI, XXII

III, IV, V, VI, IX, X, XIX, XX, XXIII, XXIV

p72-1R

AGTGGAAGGGTATGTAAG

p72-1P

CCGTAACTGCTCATGGTATCAATCT

Set 2

p72-2F

TCTGCAGCTCTTACATAC

162

III, IV, V, VI, IX, XIX, XX, XXIII, XXIV

I, II, VII, VIII, XI, XII, XIII, XIV, XV, XVI, XVII, XVIII, XXI, XXII

p72-2R

CCCAACTAATATAAAATTCTCTTG

p72-2P

CCACTACGGAGGCAATGCGA

p72-2R1

CCCAGCTAATATAAAACTCTCTTG

X

p72-2P1

TCACTACGGAGGCAATTCGA

Set 3

p72-3F

GCGATGATGATTACCTTTG

97

III, IV, V, VI, XIX, XX, XXIII, XXIV, IX

I, II, VII, VIII, XI, XII, XIII, XIV, XV, XVI, XVII, XVIII, XXI, XXII

p72-3R

CCCAACTAATATAAAATTCTCTTG

p72-3P

AGCCACGGGAGGAATACCAAC

p72-3R1

CCCAGCTAATATAAAATTCTCTTG

IX

p72-3R2

CCCAGCTAATATAAAACTCTCTTG

X

p72-3P1

AACCACGGGAGGAATACCAAC

IX, X