Group | Primer/probe | Primer/probe sequence (5'-3') | Length (bp) | Covered genotype | Uncovered genotype |
Set 1 | p72-1F | ATCCGATCACATTACCTA | 108 | I, II, VII, VIII, XI, XII, XIII, XIV, XV, XVI, XVII, XVIII, XXI, XXII | III, IV, V, VI, IX, X, XIX, XX, XXIII, XXIV |
p72-1R | AGTGGAAGGGTATGTAAG | ||||
p72-1P | CCGTAACTGCTCATGGTATCAATCT | ||||
Set 2 | p72-2F | TCTGCAGCTCTTACATAC | 162 | III, IV, V, VI, IX, XIX, XX, XXIII, XXIV | I, II, VII, VIII, XI, XII, XIII, XIV, XV, XVI, XVII, XVIII, XXI, XXII |
p72-2R | CCCAACTAATATAAAATTCTCTTG | ||||
p72-2P | CCACTACGGAGGCAATGCGA | ||||
p72-2R1 | CCCAGCTAATATAAAACTCTCTTG | X | |||
p72-2P1 | TCACTACGGAGGCAATTCGA | ||||
Set 3 | p72-3F | GCGATGATGATTACCTTTG | 97 | III, IV, V, VI, XIX, XX, XXIII, XXIV, IX | I, II, VII, VIII, XI, XII, XIII, XIV, XV, XVI, XVII, XVIII, XXI, XXII |
p72-3R | CCCAACTAATATAAAATTCTCTTG | ||||
p72-3P | AGCCACGGGAGGAATACCAAC | ||||
p72-3R1 | CCCAGCTAATATAAAATTCTCTTG | IX | |||
p72-3R2 | CCCAGCTAATATAAAACTCTCTTG | X | |||
p72-3P1 | AACCACGGGAGGAATACCAAC | IX, X |