| No. | Descriptor | Group | # Features |
| 1 | Amino acid composition | Amino acid composition | 20 |
| 2 | Dipeptide composition | 400 | |
| 3 | Tripeptide composition | 8000 | |
| 4 | Normalized Moreau-Broto | Autocorrelation | 240a |
| 5 | Moran | 240a | |
| 6 | Geary | 240a | |
| 7 | Composition | CTD | 21 |
| 8 | Transition | 21 | |
| 9 | Distribution | 105 | |
| 10 | Conjoint Triad | Conjoint Triad | 343 |
| 11 | Sequence-order-coupling number | Quasi-sequence-order | 60a |
| 12 | Quasi-sequence-order descriptors | 100a | |
| 13 | Type I | Pseudo-amino acid composition | 50 |
| 14 | Type II | 80 | |
| 15 | Principal components analysis (amino acid properties based) | Proteochemometric descriptors | 175b |
| 16 | Principal components analysis (2D and 3D molecular descriptors based) | 4025b | |
| 17 | Factor analysis (amino acid properties based) | 175b | |
| 18 | Factor analysis (2D and 3D molecular descriptors based) | 4025b | |
| 19 | Multidimensional scaling (amino acid properties based) | 175b | |
| 20 | Multidimensional scaling (2D and 3D molecular descriptors based) | 4025b | |
| 21 | BLOSUM and PAM matrix-derived descriptors | 175b | |
| 22 | PSSM profile | PSSM | - |