SNP name* | SNP Type | Contig at AYZV02 project | SNP Position | LOD (-log(P)) value from TASSEL 5# | R-sqaure (%) value from TASSEL 5# | ||||||||
SMR | GLM (Q) | GLM (PCA) | MLM (Q + K) | MLM (PCA + K) | SMR | GLM (Q) | GLM (PCA) | MLM (Q + K) | MLM (PCA + K) | ||||
AYZV02052595_115 | A/T | AYZV02052595 | 115 | 4.20 | 4.12 | 4.02 | 3.05 | 3.24 | 5.90 | 5.78 | 5.63 | 4.31 | 4.59 |
AYZV02052595_122 | A/C | AYZV02052595 | 122 | 3.61 | 3.48 | 3.47 | 2.51 | 2.62 | 4.98 | 4.78 | 4.76 | 3.40 | 3.54 |
AYZV02057770_10404 | A/T | AYZV02057770 | 10404 | 2.95 | 2.84 | 2.70 | 2.24 | 2.26 | 5.16 | 4.98 | 4.74 | 4.05 | 4.05 |
AYZV02129827_205 | T/C | AYZV02129827 | 205 | 2.62 | 2.79 | 2.86 | 2.98 | 2.26 | 4.59 | 4.88 | 5.01 | 5.42 | 4.04 |
AYZV02152692_182 | A/C | AYZV02152692 | 182 | 3.53 | 3.54 | 3.56 | 2.78 | 2.23 | 6.00 | 6.03 | 6.05 | 5.12 | 4.03 |
AYZV02180153_337 | G/T | AYZV02180153 | 337 | 4.78 | 4.76 | 4.68 | 4.00 | 4.05 | 8.01 | 8.00 | 7.89 | 7.45 | 7.68 |
AYZV02225889_197 | G/A | AYZV02225889 | 197 | 5.98 | 5.97 | 5.99 | 4.70 | 4.19 | 10.19 | 10.21 | 10.25 | 8.88 | 7.83 |
AYZV02258563_213 | C/G | AYZV02258563 | 213 | 3.65 | 3.58 | 3.56 | 3.34 | 3.27 | 5.00 | 4.91 | 4.87 | 4.71 | 4.55 |