| Gene | Sequence 5’-3’ | PCR conditions | Size | Reference |
| 16S rRNA F
16S rRNA R | GTGCCAGCAGCCGCGGTAA
AGACCCGGGAACGTATTCAC | 94˚C × 5 min 55˚C × 30 s 35 cycles 72˚C × 50 s 72˚C ×10 min | 886 bp | [30] |
| nuc F
nuc R | GCGATTGATGGTGATACGGT
AGCCAAGCCTTGACGAACTAAAGC | 94˚C × 5 mins 55˚C × 30 s 35 cycles 72˚C × 50 s 72˚C ×10 mins | 270 bp | [32] |
| mecA F
mecA R | TCCAGATTACAACTTCACCAGG
CCACTTCATATCTTGTAACG | 94˚C × 5 min 55˚C × 30 s 35 cycles 72˚C × 50 s 72˚C ×10 min | 162 bp | [31] |