Sample ID

Date of collection

WHO Lineage

Spike protein mutation

KENYA_104_19042021

6/4/21

Delta

T19R, P681R, D614G, L452R, F157del, R158del, D228H, E156G, G142D, T478K

KENYA_125_19052021

19/5/21

Delta

T19R, P681R, D614G, D950N, Q613H, T478K, L452R, F157del, R158del, E156G, G142D

KENYA_138_10062021

10/6/21

Delta

T19R, P681R, D614G, D950N, T478K, L452R, F157del, R158del, E156G, T95I, G142D

KENYA_139_10062021

10/6/21

Delta

P681R, D614G, L452R, F157del, R158del, E156G, T478K, D142D, D950N

KENYA_141_10062021

10/6/21

Delta

T19R, P681R, D614G, D950N, T478K, L452R, F157del, R158del, E156G, S112L, G142D

KENYA_143_10062021

10/6/21

(Alpha,V1)

A570D.S982A, P681H, D614G, T716I, Y144del, N501Y, D1118H, V70del, H69del

KENYA_164_15072021

15/7/21

recombinant (Delta and Alpha)

P681R, D614G, D950N, T478K, L452R, A520S

KENYA_203_12082021

12/8/21

Delta

T19R, P681R, D614G, L452R, F157del, R158del, D228H, E156G, D142D, T478K, D950N

KENYA_205_12082021

12/8/21

Delta

T19R, V90I, P681R, D614G, D950N, T478K, L452R, F157del, R158del, E156G, T95I, G142D