Motif types

Occurrence

Frequency (%)

Mononucleotides

A/T

285,074

69.3%

G/C

126,082

30.6%

Subtotal

411,156

Dinucleotides

AG/CT

4695

61%

AC/GT

1147

14.9%

AT/TA

1693

22%

GC/CG

162

2.1%

Subtotal

7697

Trinucleotides

AAG/CTT

4280

31%

AGC/GCT

1725

12.5%

AGG/CCT

1606

11.6%

ACC/GGT

1082

7.8%

AAC/GTT

1053

7.6%

AAT/ATT

758

5.5%

ACG/CGT

351

2.5%

AGT/ACT

318

2.3%

ATC/GAT

2298

16.6%

GGC/GCC

321

2.3%

Subtotal

13,792

Tetranucleotides

AAAG/CTTT

165

21.3%

Others

607

Subtotal

772

Pentanucleotides

AAAAG/CTTTT

29

17.9%

AAGAG/CTCTT

AAAAC/GTTTT

10

9

6.1%

5.5%

AGAAG/CTTCT

7

4.3%

AAATT/AATTT

6

3.7%

Others

101

Subtotal

162

Hexanucleotides

AAAAAG/CTTTTT

16

7.9%

AAGAGG/CCTTCT

10

4.9%

AAAATT/AATTTT

1

0.5%

Others

176

Subtotal

203

Overall total

433,782