| Target | 5' → 3' Sequence (orientation*) | Product Size (bp) | |
| rβ-actin | CACCCGCGAGTACAACCTTCT (F) TATCGTCATCCATGGCGAACTGG (R) | 77 | |
| rBmal1 | ACTGTCTAGGTGGAGGATTTTGG(F) CTGGTCACCTCAAAGCGACT(R) | 82 | |
| rCrm1 | GAAGGAGCCCAGCAGAGAAT(F) TCTGCGAAAACTCCAAAATGGT(R) | 100 | |
| rPer2 | AGTCAGGGTAGGCCCTTTGA(F) CTGGCTCATGAGGTGTTCGT(R) | 193 | |
| rHes1 | GCTGCTACCCCAGCCAGTG(F) GCCTCTTCTCCATGATAGGCTTTG (R) | 94 | |
| rBmi1 | CTGGATGCCAAGTGGTCTTT (F) GCTGGTCTCCAAGTAACGCA(R) | 182 | |