Genes

dbSNP

Variant frequency in our study

PhyloP

SIFT

Grantham

PolyPhen

FATHMM

Comparison of Var Freq [ 62 ]

The South Asian genome

SIMON Diversity project

StatGen

1000GSAS

KIF21B

rs753390486

0.25

6.97

0.03

107

0.993

ACOXL

rs1554005

0.25

0.15

0

81

0.672

0.466

0.24303

0.20789

0.16667

0.22279

ACOXL

rs17041850

0.25

2.04

0.03

98

0.978

0.392

0.00952

0.10932

0.01389

0.02156

NCKAP5

rs776162189

0.25

6.14

0

81

1

NCKAP5

rs16841277

0.75

0.5

0

143

0.969

0.259

0.25542

0.22222

0.16667

0.22793

NCKAP5

rs142329411

0.25

−0.69

0.02

58

0.589

0.0

PARD3B

rs80119103

0.25

1.09

0

77

0.606

0.01254

0.000

ADCY2

rs13166360

0.25

6

0

32

0.598

0.15635

0.08065

0.04167

0.10780

ITGA1

Novel

0.25

3.52

0.03

99

0.998

FSTL4

rs61741674

0.25

0.58

0

45

0.999

0.02632

0.01434

0.01027

HIVEP1

rs2228209

0.75

0.64

0

81

0.982

0.26471

0.23477

0.30556

0.28234

SYNE1

rs150179494

0.25

6.51

0.01

98

0.936

0.852

0.00358

0.000

MICALL2

rs61736381

0.25

2.79

0

101

1

0.0

CSMD1

rs6558702

0.5

0.96

0.04

81

0.653

0.75160

0.70072

0.81944

0.70739

TRPA1

rs920829

0.5

6.72

0.05

56

0.994

0.984

0.17619

0.25000

0.14374

FERMT3

rs149000560

0.5

8.53

0

125

1

0.00595

0.00717

0.00000

DUSP6

rs2279574

0.5

5.81

0.03

32

0.78

0.977

0.47030

0.49104

0.52778

0.48665

GALNT4, POC1B,

rs2230283

0.75

7.43

0.02

29.0, 29.0

0.896

0.988

0.18731

0.25627

0.23611

0.16632

FAM71C, ANKS1B

rs11109968

0.5

−0.01

0

125

0.971

0.20588

0.21147

0.16667

0.17556

NUAK1

rs3741883

0.75

3.53

0

103

0.93

0.945

0.26471

0.25986

0.19444

0.27002

SPATA13

Novel

0.25

3.65

0.01

58

0.855

SPATA13

rs41287016

0.25

1.64

0

56

0.817

0.01746

0.02688

0.02778

0.01232

MTUS2

rs928661

1

1.89

0

76

1

0.198

0.87926

0.81720

0.87500

0.88090