Genes | dbSNP | Variant frequency in our study | PhyloP | SIFT | Grantham | PolyPhen | FATHMM | Comparison of Var Freq [ 62 ] | |||
The South Asian genome | SIMON Diversity project | StatGen | 1000GSAS | ||||||||
KIF21B | rs753390486 | 0.25 | 6.97 | 0.03 | 107 | 0.993 |
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ACOXL | rs1554005 | 0.25 | 0.15 | 0 | 81 | 0.672 | 0.466 | 0.24303 | 0.20789 | 0.16667 | 0.22279 |
ACOXL | rs17041850 | 0.25 | 2.04 | 0.03 | 98 | 0.978 | 0.392 | 0.00952 | 0.10932 | 0.01389 | 0.02156 |
NCKAP5 | rs776162189 | 0.25 | 6.14 | 0 | 81 | 1 |
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NCKAP5 | rs16841277 | 0.75 | 0.5 | 0 | 143 | 0.969 | 0.259 | 0.25542 | 0.22222 | 0.16667 | 0.22793 |
NCKAP5 | rs142329411 | 0.25 | −0.69 | 0.02 | 58 | 0.589 |
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| 0.0 |
PARD3B | rs80119103 | 0.25 | 1.09 | 0 | 77 | 0.606 |
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| 0.01254 |
| 0.000 |
ADCY2 | rs13166360 | 0.25 | 6 | 0 | 32 | 0.598 |
| 0.15635 | 0.08065 | 0.04167 | 0.10780 |
ITGA1 | Novel | 0.25 | 3.52 | 0.03 | 99 | 0.998 |
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FSTL4 | rs61741674 | 0.25 | 0.58 | 0 | 45 | 0.999 |
| 0.02632 | 0.01434 |
| 0.01027 |
HIVEP1 | rs2228209 | 0.75 | 0.64 | 0 | 81 | 0.982 |
| 0.26471 | 0.23477 | 0.30556 | 0.28234 |
SYNE1 | rs150179494 | 0.25 | 6.51 | 0.01 | 98 | 0.936 | 0.852 |
| 0.00358 |
| 0.000 |
MICALL2 | rs61736381 | 0.25 | 2.79 | 0 | 101 | 1 |
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| 0.0 |
CSMD1 | rs6558702 | 0.5 | 0.96 | 0.04 | 81 | 0.653 |
| 0.75160 | 0.70072 | 0.81944 | 0.70739 |
TRPA1 | rs920829 | 0.5 | 6.72 | 0.05 | 56 | 0.994 | 0.984 | 0.17619 |
| 0.25000 | 0.14374 |
FERMT3 | rs149000560 | 0.5 | 8.53 | 0 | 125 | 1 |
| 0.00595 | 0.00717 |
| 0.00000 |
DUSP6 | rs2279574 | 0.5 | 5.81 | 0.03 | 32 | 0.78 | 0.977 | 0.47030 | 0.49104 | 0.52778 | 0.48665 |
GALNT4, POC1B, | rs2230283 | 0.75 | 7.43 | 0.02 | 29.0, 29.0 | 0.896 | 0.988 | 0.18731 | 0.25627 | 0.23611 | 0.16632 |
FAM71C, ANKS1B | rs11109968 | 0.5 | −0.01 | 0 | 125 | 0.971 |
| 0.20588 | 0.21147 | 0.16667 | 0.17556 |
NUAK1 | rs3741883 | 0.75 | 3.53 | 0 | 103 | 0.93 | 0.945 | 0.26471 | 0.25986 | 0.19444 | 0.27002 |
SPATA13 | Novel | 0.25 | 3.65 | 0.01 | 58 | 0.855 |
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SPATA13 | rs41287016 | 0.25 | 1.64 | 0 | 56 | 0.817 |
| 0.01746 | 0.02688 | 0.02778 | 0.01232 |
MTUS2 | rs928661 | 1 | 1.89 | 0 | 76 | 1 | 0.198 | 0.87926 | 0.81720 | 0.87500 | 0.88090 |