| Pathotype | Target | Sequence | Size |
| EAEC | aggRᶲ
| F: GTATACACAAAAGAAGGAAGC R: ACAGAATCGTCAGCATCAGC | 254 bp |
| aspu†
| F: GCCTTTGCGGGTGGTAGCGG R: AACCCATTCGGTTAGAGCAC | 282 bp | |
| EHEC | stx†
| F: AGCTGCAAGTGCGGGTCTG R: TACGGGTTATGCCTGCAAGTTCAC | 518 bp |
| EIEC | ipaH*
| F: GTTCCTTGACCGCCTTTCCGATACCGC R: GCCGGTCAGCCACCCTCTGAGAGTAC | 600 bp |
| EPEC | eaeᶲ
| F: CTGAACGGCGATTACGCGAA R: CCAGACGATACGATCCAG | 881 bp |
| ETEC | estᶲ
| F: TTAATAGCACCCGGTACAAGCAGG R: CCTGACTCTTCAAAAGAGAAAATTAC | 147 bp |
| eltᶲ
| F: TCTCTATGTGCATACGGAGC R: CCATACTGATTGCCGCAAT | 322 bp |