Set/subset Aa | Set/subset Ba | Qa | AQ+ | AQ- | Aa | BQ+ | BQ- | Ba | ORb | One-tb | Two-tb | SQ-evalc | |||
i) Dominance of RoK in content of cdigvtk (extension of studies in Table 1) | |||||||||||||||
RoK | ter+ | C(m) | 112 | 9 | 121 | 19 | 109 | 128 | 71.4 | 7.72E−39 | 1.17E−38 | ssl_C | |||
RoK | ter+ | C(t) | 102 | 19 | 121 | 17 | 111 | 128 | 35.1 | 1.22E−31 | 1.30E−31 | ssl_C | |||
RoK | panI1 | C(m) | 112 | 9 | 121 | 10 | 35 | 45 | 43.6 | 1.07E−18 | 1.07E−18 | ssl_C | |||
RoK | panI1 | C(t) | 102 | 19 | 121 | 10 | 35 | 45 | 18.8 | 1.18E−13 | 1.18E−13 | ssl_C | |||
RoK | NRI1 | C(m) | 112 | 9 | 121 | 7 | 42 | 49 | 74.7 | 1.17E−23 | 1.17E−23 | ssl_C | |||
RoK | NRI1 | C(t) | 102 | 19 | 121 | 6 | 43 | 49 | 38.5 | 5.70E−19 | 5.70E−19 | ssl_C | |||
RoK | t100dm | C(m) | 112 | 9 | 121 | 12 | 123 | 135 | 128 | 1.03E−46 | 1.12E−46 | ssl_C | |||
RoK | t100dm | C(t) | 102 | 19 | 121 | 7 | 128 | 135 | 98.2 | 2.81E−42 | 2.82E−42 | ssl_C | |||
RoK | resis | C(m) | 112 | 9 | 121 | 3 | 46 | 49 | 191 | 1.07E−28 | 1.07E−28 | ssl_C | |||
RoK | resis | C(t) | 102 | 19 | 121 | 3 | 46 | 49 | 82.3 | 1.59E−22 | 1.59E−22 | ssl_C | |||
ii) Linkages between cdigvtk and ALPS-related subsets | |||||||||||||||
RoK-P | resub | C(m) | 99 | 5 | 104 | 13 | 4 | 17 | 6.09 | 2.21E−2 | 2.21E−2 | si_QC | |||
RoK-P | resub | C(t) | 90 | 14 | 104 | 12 | 5 | 17 | 2.68 | 9.87E−2 | 0.14214 | q/poor_S | |||
t100dm-P | resub | C(m) | 10 | 60 | 70 | 2 | 63 | 65 | 5.25 | 2.11E−2 | 3.19E−2 | si_QC | |||
t100dm-P | resub | C(t) | 5 | 65 | 70 | 2 | 63 | 65 | 2.42 | 0.25208 | 0.44297 | poor_S | |||
q2m2-P | resub | C(m) | 8 | 49 | 57 | 1 | 38 | 39 | 6.20 | 5.66E−2 | 7.84E−2 | q_QC | |||
q2m2-P | resub | C(t) | 5 | 52 | 57 | 1 | 38 | 39 | 3.65 | 0.21529 | 0.39581 | poor_S | |||
F1oP1 | I2oF1 | C(m) | 9 | 45 | 54 | 8 | 73 | 81 | 1.83 | 0.18348 | 0.29343 | poor_W | |||
F1oP1 | I2oF1 | C(t) | 8 | 46 | 54 | 2 | 79 | 81 | 6.87 | 9.71E−3 | 1.45E−2 | si_QC | |||
F1oP1 | panI1 | C* | 9 | 45 | 54 | 10 | 35 | 45 | 0.7 | 0.32800 | 0.60969 | poor_inv | |||
iii) Associations of lectin domain pfam01453 (P1453) | |||||||||||||||
pan I1 | F1oP1 | P1453 | 13 | 32 | 45 | 3 | 51 | 54 | 6.91 | 1.83E−3 | 2.19E−3 | si2_QC | |||
RoK-NP | resub | P1453 | 9 | 8 | 17 | 15 | 89 | 104 | 6.68 | 9.81E−4 | 9.81E−4 | si2_QC | |||
RoK_nLRR6x | resub | P1453 | 24 | 54 | 78 | 0 | 43 | 43 | 20.0 | 5.83E−6 | 1.87E−5 | si2_C | |||
iv) Combined analysis and linkages of functionally related terms in different RoK subsets | |||||||||||||||
RoK-P | resub | antifu2 | 7 | 97 | 104 | 0 | 17 | 17 | 1.47 | 0.33645 | 0.59146 | poor_W | |||
RoK_nLRR6x | resub | antifu2 | 7 | 71 | 78 | 0 | 43 | 43 | 4.89 | 4.18E−2 | 9.57E−2 | si/q_QC | |||
RoK-P_nLRR6x | resub | antifu2 | 7 | 57 | 64 | 0 | 57 | 57 | 8.00 | 9.84E−3 | 1.40E−2 | si_QC | |||
RoK-P_nLRR6x_C(m) | resub | antifu2 | 7 | 56 | 63 | 0 | 49 | 49 | 7.02 | 1.53E−2 | 1.76E−2 | si_QC | |||
RoK-P_nLRR6x_C(t) | resub | antifu2 | 7 | 54 | 61 | 0 | 41 | 41 | 6.11 | 2.36E−2 | 3.97E−2 | si_QC | |||
RoK-P | resub | antivir2 | 93 | 11 | 104 | 11 | 6 | 17 | 4.61 | 1.51E−2 | 1.51E−2 | si_QC | |||
RoK_nLRR6x | resub | antivir2 | 71 | 7 | 78 | 33 | 10 | 43 | 3.07 | 3.13E−2 | 5.28E−2 | si/q_S | |||
RoK-P_nLRR6x | resub | antivir2 | 62 | 2 | 64 | 42 | 15 | 57 | 11.1 | 2.19E−4 | 3.51E−4 | si2_C | |||
RoK-P_nLRR6x_C(m) | resub | antivir2 | 62 | 1 | 63 | 42 | 7 | 49 | 10.3 | 1.23E−2 | 2.05E−2 | si_C | |||
RoK-P_nLRR6x_C(t) | resub | antivir2 | 60 | 1 | 61 | 37 | 4 | 41 | 6.49 | 0.08316 | 0.15459 | q/poor_QC | |||