| Traita | SNP ID | Supercontigb | Position in supercontigb | R of model with SNP | P | P_FDR_adjb | Protein IDc | Protein functiond | Substitutione | Amino acid change |
| AvYr1 | 00438 | 1.38 | 88249 | 0.83 | 2.67 × 10−5 | 2.53 × 10−3 | PSTG06534 | HP | Intron | None |
|
| 00309 | 1.69 | 420957 | 0.83 | 4.17 × 10−4 | 0.01 | PSTG09436 | HP | NS | Leu/Arg |
|
| 00011 | 1.96 | 157476 | 0.83 | 4.49 × 10−4 | 0.01 | PSTG11251 | Mago nashi protein | Intron | None |
|
| 00222 | 1.40 | 615965 | 0.83 | 4.63 × 10−4 | 0.01 | PSTG06861 | HP | NS | Ser/Phe |
|
| 00405 | 1.110 | 97515 | 0.83 | 9.03 × 10−4 | 0.02 | PSTG11949 | HP | NS | Cys/Tyr |
| AvYr2 | 00007 | 1.187 | 131220 | 0.44 | 1.77 × 10−4 | 0.02 | PSTG14871 | HP | UTR | None |
| AvYr6 | 00396 | 1.30 | 431009 | 0.52 | 4.81 × 10−7 | 4.57 × 10−5 | PSTG05563 | Glycerol kinase | UTR | None |
|
| 00441 | 1.85 | 83076 | 0.50 | 2.31 × 10−5 | 1.09 × 10−3 | PSTG10535 | U6 snRNA- associated Sm-like protein LSm2 | Intron | None |
|
| 00015 | 1.21 | 57897 | 0.49 | 2.36 × 10−4 | 7.46 × 10−3 | PSTG04138 | Alpha, alphatrehalase | UTR | None |
|
| 00132 | 1.13 | 708524 | 0.48 | 1.00 × 10−3 | 0.02 | PSTG02790 | HP | UTR | None |
|
| 00399 | 1.13 | 1112078 | 0.48 | 2.00 × 10−3 | 0.03 | PSTG02835 | HP | NS | His/Gln |
|
| 00014 | 1.93 | 309281 | 0.48 | 2.00 × 10−3 | 0.03 | PSTG11109 | HP | NS | Ala/Gly |
| AvYr7 | 00064 | 1.11 | 387678 | 0.79 | 9.02 × 10−5 | 8.57 × 10−3 | PSTG02350 | HP | S | None |
|
| 00392 | 1.31 | 481120 | 0.79 | 3.90 × 10−4 | 0.01 | PSTG05710 | GDP-mannose 4,6 dehydratase | Intron | None |
|
| 00438 | 1.38 | 88249 | 0.79 | 4.40 × 10−4 | 0.01 | PSTG06534 | HP | Intron | None |
|
| 00004 | 1.145 | 12799 | 0.78 | 1.87 × 10−3 | 0.04 | PSTG13532 | high mobility group protein B1 | UTR | None |
|
| 00024 | 1.145 | 87717 | 0.78 | 2.44 × 10−3 | 0.04 | PSTG13552 | HP | S | None |
|
| 00414 | 1.42 | 197066 | 0.78 | 3.40 × 10−3 | 0.05 | PSTG07002 | ADP-ribosylation factor-like protein 8A | S | None |
|
| 00258 | 1.37 | 626929 | 0.78 | 3.64 × 10−3 | 0.05 | PSTG06507 | HP | S | None |
| AvYr8 | 00432 | 1.12 | 573559 | 0.57 | 1.80 × 10−4 | 0.02 | PSTG02592 | HP | S | None |
|
| 00367 | 1.3 | 1557927 | 0.56 | 9.70 × 10−4 | 0.04 | PSTG00836 | HP | Intron | None |
| AvYr44 | 00414 | 1.42 | 197066 | 0.79 | 1.70 × 10−4 | 0.01 | PSTG07002 | ADP-ribosylation factor-like protein 8A | S | None |
|
| 00392 | 1.31 | 481120 | 0.79 | 2.50 × 10−4 | 0.01 | PSTG05710 | GDP-mannose 4,6 dehydratase | Intron | None |
|
| 00438 | 1.38 | 88249 | 0.79 | 6.50 × 10−4 | 0.01 | PSTG06534 | HP | Intron | None |
|
| 00017 | 1.5 | 799856 | 0.79 | 1.28 × 10−3 | 0.03 | PSTG01177 | HP | UTR | None |
|
| 00258 | 1.37 | 626929 | 0.78 | 1.94 × 10−3 | 0.03 | PSTG06507 | HP | S | None |
|
| 00024 | 1.145 | 87717 | 0.78 | 2.26 × 10−3 | 0.03 | PSTG13552 | HP | S | None |
|
| 00438 | 1.38 | 88249 | 0.79 | 6.50 × 10−4 | 0.01 | PSTG06534 | HP | Intron | None |
|
| 00004 | 1.145 | 12799 | 0.78 | 2.48 × 10−3 | 0.03 | PSTG13532 | high mobility group protein B1 | UTR | None |
|
| 00282 | 1.91 | 34788 | 0.78 | 3.81 × 10−3 | 0.04 | PSTG10918 | HP | S | None |
|
| 00363 | 1.7 | 931271 | 0.78 | 4.21 × 10−3 | 0.04 | PSTG01573 | HP | S | None |
| AvYrExp2 | 00376 | 1.72 | 436595 | 0.67 | 4.92 × 10−5 | 4.68 × 10−3 | PSTG09673 | Histone H4 | S | None |
| AvYrSP | 00126 | 1.208 | 34854 | 0.59 | 9.81 × 10−9 | 9.32 × 10−7 | PSTG15248 | HP | NS | Thr/Ala |
|
| 00043 | 1.13 | 1111649 | 0.58 | 1.68 × 10−7 | 7.99 × 10−6 | PSTG02836 | HP | UTR | None |
|
| 00309 | 1.69 | 420957 | 0.56 | 2.41 × 10−5 | 7.60 × 10−4 | PSTG09436 | HP | NS | Leu/Arg |
|
| 00021 | 1.230 | 1502 | 0.55 | 1.90 × 10−4 | 4.61 × 10−3 | PSTG15691 | HP | UTR | None |
|
| 00182 | 1.4 | 935429 | 0.55 | 5.50 × 10−4 | 0.01 | PSTG00958 | HP | NS | Thr/Ile |
|
| 00058 | 1.15 | 718034 | 0.54 | 1.74 × 10−3 | 0.03 | PSTG03194 | HP | NS | Leu/Ser |
|
| 00368 | 1.22 | 210296 | 0.54 | 2.67 × 10−3 | 0.04 | PSTG04299 | HP | Intron | None |
| AvYrTye | 00011 | 1.96 | 157476 | 0.80 | 1.50 × 10−4 | 7.70 × 10−3 | PSTG11251 | Mago nashi protein | Intron | None |
|
| 00222 | 1.40 | 615965 | 0.80 | 1.60 × 10−4 | 7.70 × 10−3 | PSTG06861 | HP | NS | Ser/Phe |
|
| 00405 | 1.110 | 97515 | 0.80 | 6.40 × 10−4 | 0.02 | PSTG11949 | HP | NS | Cys/Tyr |