Pathway No	KEGG Pathway	All DEGs with pathway annotation (15697)		Pathway ID	No of pairs in common	Significance
Pathway No	KEGG Pathway	DEGs No	Percentage (%)	Pathway ID	No of pairs in common	Significance
1	Metabolic pathways	3127	19.92	ko01100	14	(1), (7), **(6)
2	Biosynthesis of secondary metabolites	1592	10.14	ko01110	14	(2), (6), **(6)
3	Zeatin biosynthesis	121	0.77	ko00908	13	(5), (4), **(4)
4	alpha-Linolenic acid metabolism	79	0.50	ko00592	9	(5), (2), **(2)
5	Limonene and pinene degradation	91	0.58	ko00903	9	(5), (3), **(1)
6	Phenylpropanoid biosynthesis	144	0.92	ko00940	9	(2), (4), **(3)
7	Terpenoid backbone biosynthesis	148	0.94	ko00900	9	(4), (3), **(2)
8	Plant hormone signal transduction	589	3.75	ko04075	8	(4), (3), **(1)
9	Stilbenoid, diarylheptanoid and gingerol biosynthesis	86	0.55	ko00945	8	(3), (2), **(3)
10	Flavone and flavonol biosynthesis	51	0.32	ko00944	6	(2), (2), **(2)
11	Phenylalanine metabolism	74	0.47	ko00360	6	(5), **(1)
12	Plant-pathogen interaction	543	3.46	ko04626	6	(3), (1), **(2)
13	Caffeine metabolism	7	0.04	ko00232	5	(3), *(2)
14	Flavonoid biosynthesis	87	0.55	ko00941	5	(4), *(1)
15	Fructose and mannose metabolism	107	0.68	ko00051	5	*
16	Linoleic acid metabolism	36	0.23	ko00591	5	(4), **(1)
17	Mismatch repair	128	0.82	ko03430	5	*
18	N-Glycan biosynthesis	106	0.68	ko00510	5	(3), *(2)
19	Pentose and glucuronate interconversions	92	0.59	ko00040	5	(2), *(3)
20	Sesquiterpenoid and triterpenoid biosynthesis	22	0.14	ko00909	5	(4), *(1)
21	ABC transporters	152	0.97	ko02010	4	(2), (1), **(1)
22	Diterpenoid biosynthesis	30	0.19	ko00904	4	*
23	Ether lipid metabolism	62	0.39	ko00565	4	*
24	Fatty acid biosynthesis	50	0.32	ko00061	4	(2), *(2)
25	Fatty acid elongation	35	0.22	ko00062	4	(3), *(1)
26	Galactose metabolism	134	0.85	ko00052	4	*
27	Glycosphingolipid biosynthesis - ganglio series	31	0.20	ko00604	4	(2), *(2)
28	Photosynthesis - antenna proteins	16	0.10	ko00196	4	*
29	Base excision repair	113	0.72	ko03410	3	*
30	Biosynthesis of unsaturated fatty acids	45	0.29	ko01040	3	(2), *(1)
31	DNA replication	130	0.83	ko03030	3	(1), *(2)
32	Fatty acid metabolism	106	0.68	ko00071	3	*
33	Glucosinolate biosynthesis	14	0.09	ko00966	3	(1), *(2)
34	Glutathione metabolism	109	0.69	ko00480	3	(2), *(1)
35	Glycerolipid metabolism	126	0.80	ko00561	3	*
36	Glycerophospholipid metabolism	182	1.16	ko00564	3	*
37	Glycine, serine and threonine metabolism	104	0.66	ko00260	3	(2), *(1)