Locus | Primer sequences (5'?3') | Repeat motif | Ta (°C)a | Size (bp) | Total No. alleles | U. brizantha | U. decumbens diploid | U. decumbens tetraploid | U. humidicola | U. ruziziensis | PIC |
No. alleles | No. alleles | No. alleles | No. alleles | No. alleles | |||||||
DecSSR181 | F: AGTTGGTGTTGGCAATAACTCTG R: CTTCTTGGCAGTTGAAGCATCT | CGG(3*5) | 60 | 180 - 210 | 5 | 4 | 1 | 2 | 2 | 3 | 0.60 |
DecSSR184 | F: CCGAACTTGAGTTGTTATTTCCA R: AACTGATGGTAACTCTTGGAGCA | TGG(3*5) | 60 | 120 - 140 | 2 | 1 | 1 | 1 | 2 | 1 | 0.12 |
DecSSR186 | F: CAGGAACGGGGAGACGAG R: CTCACCAACGTCGGCCTC | CGG(3*5) | 60 | 80 - 90 | 1 | 1 | 1 | 1 | xb | 1 | x |
DecSSR187 | F: GGTGCGTACAACAACTACTGATCT R: CTGTGCACGCTCGCTGAC | GCT(3*5) | 62 | 150 - 170 | 5 | 2 | 5 | 2 | x | 2 | 0.66 |
DecSSR188 | F: GTGTGCCTCTGAGACCCAGT R: CCCAGCTCAGCCAGTACTTC | GGA (3*5) | 62 | 120 - 140 | 4 | 1 | 1 | 3 | 1 | 1 | 0.31 |
DecSSR194 | F: CTCCGCCTTGCAGTACCTC R: TGCAGTACAACAACTACCACCTC | GCT(3*5) | 60 | 110 - 120 | 2 | 2 | 2 | 2 | x | 2 | 0.50 |
DecSSR195 | F: GTCCCGGTGGTGGTGTCC R: GTTCCACCTGATCTCGCTCTC | GGA(3*5) | 62 | 90 - 100 | 4 | 2 | 1 | 3 | x | 2 | 0.56 |
DecSSR199 | F: ATTCAGATGCATTTTTCTTCGTC R: AGCAGCGTATAATAAGCAAGCAC | TCA(3*5) | 60 | 140 - 160 | 2 | x | 2 | 2 | x | 2 | 0.46 |
DecSSR202 | F: CTGCTTCTTATAGATCCGACCAC R: TCTTTAGGAGAGGGATCGAGATT | TCG(3*5) | 60 | 110 - 150 | 7 | 1 | 4 | 2 | 1 | 4 | 0.81 |
DecSSR203 | F: GTGATGACGGATGCGGTT R: ACTATCCGACTTCGCCCAC | GCG(3*5) | 62 | 110 - 100 | 4 | 3 | 2 | 4 | x | 1 | 0.66 |
DecSSR205 | F: GAAATCAGAGATGCCCAGACC R: AGCGAGATCACCACGGAG | CCG(3*5) | 62 | 90 - 110 | 2 | 1 | 2 | 1 | x | 1 | 0.14 |
DecSSR206 | F: GGTGGTACCCGGAGTTAGAGTT R: GCTACCACTACGACCAGGACTC | GCC (3*5) | 62 | 100 - 110 | 3 | 1 | 1 | 2 | 1 | 1 | 0.24 |
DecSSR211 | F: GTATTAATTCACTGGGTGTCGCT R: CCATCACCTCCATCATAGGC | TTG(3*5) | 60 | 130 - 150 | 4 | 1 | 1 | 1 | 2 | 2 | 0.56 |
DecSSR212 | F: GCCGTATCTCCTTCTCCCAC R: CACTACCCCTCCCTCCTCTC | GAG(3*5) | 62 | 110 - 140 | 13 | 11 | 5 | 5 | 3 | 4 | 0.84 |
DecSSR213 | F: CAGAGGAAAGGAAGCAGCAG R: GGCATCACCACCGTCTGG | CAG(3*5) | 62 | 110 - 130 | 8 | 7 | 2 | 4 | x | 3 | 0.81 |
DecSSR214 | F: AGGAACTGGTGCTCCTTCTTC R: TCCTACAAGTACACAATCCCACC | GGC(3*5) | 60 | 120 - 160 | 7 | 5 | 3 | 5 | 1 | 5 | 0.77 |
DecSSR217 | F: TCTGCAAACTGAGGTTCTTCTTC R: TTGCCAAACGAGACCATAGAGTA | TTC (3*5) | 55 | 260 - 310 | 4 | 1 | 1 | 3 | x | 1 | 0.41 |
DecSSR218 | F: TATCTCTATCTGGGGATTGGAGC R: AAACAAAACCAAATCGCGG | GCG(3*6) | 60 | 140 - 160 | 6 | 3 | 3 | 4 | 3 | 2 | 0.80 |
DecSSR221 | F: ATCGACACTACTCTCGGCATAAC R: GTATGTGGTGGAGGTAGTTGGG | TCG(3*5) | 60 | 120-140 | 3 | 1 | 1 | 1 | 2 | 2 | 0.55 |
DecSSR222 | F: GGTCATCACCGACTGGTTATTTA R: ACTTGACAAATCTCTGTCCCGTA | GGC(3*5) | 55 | 130 - 140 | 5 | 4 | 1 | 3 | 2 | 4 | 0.63 |
DecSSR224 | F: AAGACGAAGCGAGCGTTG R: CTTCCTCTCCTGGTCGTCCT | CGG(3*5) | 62 | 90 - 100 | 2 | 1 | 2 | 1 | 1 | 2 | 0.33 |
DecSSR228 | F: GTCGTCGAGCTTCCCGAG R: CTGCTAGAGACGCGGAGC | GCC(3*5) | 60 | 100 - 110 | 3 | 2 | 1 | 2 | 1 | 2 | 0.51 |