| material | Base site No. | ||||||||
| 49 | 132 - 133 | 220.225 | 267 - 273 | 332 | 369 | 512 - 528 | 595 | 603 - 606 | |
| 9311 | C | -- | -------- | CTTTATC | T | - | TTATTTCGATTTCTATA | T | TAAA |
| Nanjing 3 hao | C | -- | -------- | CTTTATC | T | - | TTATTTCGATTTCTATA | T | TAAA |
| Guanglu ai si hao | C | -- | -------- | CTTTATC | T | - | TTATTTCGATTTCTATA | T | TAAA |
| Nipponbare | C | -- | -------- | ------------ | T | - | TTATTTCGATTTCTATA | T | TAAA |
| Bai ri zao | C | -- | -------- | ------------ | T | - | TTATTTCGATTTCTATA | T | TAAA |
| Ai zi nuo | C | -- | -------- | ------------ | T | - | TTATTTCGATTTCTATA | T | TAAA |
| Jin 23A1 | C | -- | GTTGAG | ------------ | T | - | TTATTTCGATTTCTATA | T | TAAA |
| Guangye A1 | C | -- | GTTGAG | ------------ | T | - | TTATTTCGATTTCTATA | T | TAAA |
| V20A1 | C | -- | GTTGAG | ------------ | T | - | TTATTTCGATTTCTATA | T | TAAA |
| Chuanxiang 29A1 | C | -- | GTTGAG | ------------ | T | - | TTATTTCGATTTCTATA | T | TAAA |
| Zhenshan 97A1 | C | -- | GTTGAG | ------------ | T | - | TTATTTCGATTTCTATA | T | TAAA |
| T98A1 | C | -- | GTTGAG | ------------ | T | - | TTATTTCGATTTCTATA | T | TAAA |
| II-32A2 | C | -- | GTTGAG | ------------ | T | - | TTATTTCGATTTCTATA | T | TAAA |
| Zhong 9A2 | C | -- | GTTGAG | ------------ | T | - | TTATTTCGATTTCTATA | T | TAAA |
| You 1A2 | C | -- | GTTGAG | ------------ | T | - | TTATTTCGATTTCTATA | T | TAAA |
| K17A3 | C | -- | GTTGAG | ------------ | T | - | TTATTTCGATTTCTATA | T | TAAA |
| Yuetai A4 | C | -- | -------- | ------------ | T | - | TTATTTCGATTTCTATA | G | TAAA |
| Hepu CWR | C | -- | -------- | ------------ | T | - | TTATTTCGATTTCTATA | T | TAAA |
| Dongxiang CWR | C | -- | -------- | ------------ | T | - | TTATTTCGATTTCTATA | T | TAAA |
| Hainan CWR | C | -- | -------- | ------------ | T | - | TTATTTCGATTTCTATA | T | TAAA |
| Chaling CWR | C | -- | -------- | ------------ | T | - | TTATTTCGATTTCTATA | T | TAAA |
| Fusui CWR | G | -- | -------- | ------------ | T | - | TTATTTCGATTTCTATA | T | TAAA |
| Nivala wild rice | C | -- | -------- | ------------ | T | - | TTATTTCGATTTCTATA | T | TAAA |
| Brazil upland rice | C | -- | -------- | ------------ | T | - | TTATTTCGATTTCTATA | T | TAAA |
| Lemont | C | -- | -------- | ------------ | T | - | TTATTTCGATTTCTATA | T | TAAA |
| O. punctata | C | A- | -------- | ------------ | T | - | TTATTTCGATTTCTATA | T | TAAA |
| O. minutaa | C | -- | -------- | ------------ | T | - | TTATTTCGATTTCTATA | T | TAAA |
| O. minutab | C | -- | -------- | ------------ | T | - | TTATTTCGATTTCTATA | T | TAAA |
| O. rhizomatisa | C | A- | -------- | ------------ | T | - | TTATTTCGATTTCTATA | T | TAAA |
| O. rhizomatisb | C | A- | -------- | ------------ | T | - | TTATTTCGATTTCTATA | T | TAAA |
| O. rhizomatisc | C | A- | -------- | ------------ | T | - | TTATTTCGATTTCTATA | T | TAAA |