| Species | Primer name | Sequence (5’ to 3’) |
| Lophodermium conigenum | Lo1F | TGCCTTGGCGCCTAGCGCCA |
|
| Lo1R | CTCCTACGAGCGGCGAGTAG |
| Lecanosticta acicola | Le1F | GCTCCCGGTGGCCATCTATC |
|
| Le1R | GAACTCCCTAGCGAAAATGT |
| Pestalotiopsis neglecta | Pe1F | CTCGGTGCACCTTACCTTGG |
|
| Pe1R | AAAGACGCTGCAACTCCAGT |
| Rhizosphaera kalkhoffii | Rk1F | TCTCGAGCGCACCGGTTTCT |
|
| Rk1R | CCAGACTTATAAGACGTTTTGATTT |
| Septorioides pini-thunbergii | Sp1F | ACCAGCGCGTCGAGAGGCGC |
|
| Sp1R | AACCTCCAAAGCGAGAAGAAT |
| Pinus thunbergii | rbcLF | CATGGTATCCAAGTTGAAAGAGA |
| (RuBisCO large subunit) | rbcLR | CGGTGAATGTGAAGAAGTAG |