| Phylum | Section | Organism |
| Acidobacteria | Acidobacteriales | |
| Candidatus Koribacter. | ||
| Solibacteres | ||
| Actinobacteria | Acidimicrobidae | |
| Actinobacteridae | ||
| Coriobacteridae | ||
| Rubrobacteridae | ||
| Aquificae | Aquificales | Persephonella marina |
| Bacteroidetes | Bacteroidia | |
| Candidatus Amoebophilus | ||
| Flavobacteria | ||
| Sphingobacteria | ||
| Chlamydiae | Chlamydiales | |
| Chlorobi | Chlorobia | Chlorobaculum parvum |
| Chloroflexi | Chloroflexales | |
| Dehalococcoidetes | ||
| Herpetosiphonales | ||
| Thermomicrobiales | ||
| Cyanobacteria | Acaryochloris. | |
| Chroococcales | ||
| Gloeobacteria | ||
| Nostocales | ||
| Oscillatoriales | ||
| Prochlorales | ||
| Deinococcus-Thermus | Deinococci | |
| Dictyoglomi | Dictyoglomia | |
| Elusimicrobia | Elusimicrobiales | |
| Firmicutes | Bacilli | Enterococcus faecalis |
| Clostridia | Thermoanaerobacter tengcongensis | |
| Fusobacteria | Fusobacteriales | |
| Gemmatimonadetes | Gemmatimonadales | |
| Nitrospirae | Nitrospirales | |
| Planctomycetes | Planctomycetacia | |
| Proteobacteria | Alphaproteobacteria | |
| Betaproteobacteria | Burkholderia xenovorans |