Gene | Fold expression | Regulation | Function |
Oxidative damage response | |||
oxyS | 28.8 | Up | Small regulatory RNA, responsive to oxidative stress |
katG | 19.3 | Up | Catalase/hydrogen peroxidase |
sodA | 2.1 | Up | Superoxide dismutase/detoxification of superoxide radicals |
soxS | 2.9 | Up | Transcriptional regulator of oxidative stress |
yhjA | 2.0 | Up | Cytochrome-C peroxidase activity |
ahpF | 7.0 | Up | Disulfide oxidoreductase activity/peroxidase |
ahpC | 3.9 | Up | Peroxidase activity/peroxiredoxin |
ybiX | −2.4 | Down | Fe(II)-dependent oxygenase, hydroxylase activity |
SOS response | |||
recN | 2.4 | Up | DNA recombination & repair |
dinL | 2.1 | Up | DNA-damage-inducible protein |
recD | 2.3 | Up | DNA repair, helicase activity, exonuclease V subunit |
recB | 2.1 | Up | Exonuclease V subunit (recBCD complex) |
nfo | 4.4 | Up | Endonuclease IV, DNA repair |
Nitrosative stress | |||
hda | −3.2 | Down | DNA replication initiation factor |
napA | −2.6 | Down | Nitrate reductase, periplasmic |
napD | −3.2 | Down | Assembly protein for periplasmic nitrate reductase |
napF | −3.5 | Down | Ferredoxin-type protein, Fe-Fe binding, electron transport |
Related to cell envelop | |||
tsx | −2.5 | Down | Porin activity, iron membrane-transporter |
ynbA | 2.2 | Up | Inner membrane, phosphotransferase |
yjcH | −2.2 | Down | Inner membrane protein, DUF485 family |
yagU | 2.7 | Up | Response to acidity, DUF1440 family |
yliE | 2.6 | Up | Hydrolase activity, inner membrane protein |
flgF | −2.0 | Down | Flagellar/motility, flagellum basal body |
ycfS | −3.5 | Down | Peptidoglycan synthetase activity, cell shape |
livJ | −2.8 | Down | Carbon starvation induced gene, cell wall |
Other stress-related response | |||
sufA | 2.4 | Up | Response to oxidative stress, Fe-S cluster protein |
acnA | 2.2 | Up | Aconitate hydratase/oxidative stress response/TCA cycle |
uspD | 5.1 | Up | Response to stress, cytoplamic protein |
cstA | −3.2 | Down | Response to stress, plasma membrane protein |