Sequencing platform

QJ08-2006

QJ10-10

QJ10-3001

98-06

P131

Y34

FJ81278

HN19311

R88-002

70-15

Illumina

Illumina

Illumina

Illumina

Sanger + 454

Sanger + 454

PacBio

Illumina

Illumina

Sanger

Genome

Assembly genome size (Mb)

38.41

38.28

38.40

45.3

37.95

38.87

43.85

37.1

39.08

40.95

Coverage (fold)

50X

50X

50X

135X

20X

21X

247X

–

109X

–

Contig Number

2082

2239

2025

1161

2601

2114

54

6249

–

219

Average contig length (kb)

18.45

17.09

18.96

–

–

–

811.97

–

–

186.99

N50 contig length (kb)

127.4

105.13

133.16

88.6

37.7

53

147.4

–

G+C content (%)

51.40

51.49

51.39

50.8

51.5

51.3

51.03

51.5

–

51.61

Repeat sequence

2.28%

2.22%

2.28%

9.30%

2.26%

2.54%

14.43%

2.83%

2.46%

11.10%

Genes

Number of predicted genes

10,432

10,418

10,401

14,030

12,722

12,869

11,927

10,256

12,344

12,440

Average gene length (bp)

1532

1538

1535

1410

1334

1332

–

1745

–

1356

Number of secreted protein genes

1408

1410

1420

1732

1005

998

–

–

1008

1005