Bacteria |
| No. of clones | |||||||||
Control |
| UC | |||||||||
Phylum | Class | Genus | 1 | 2 | 3 | 4 |
| 1 | 3 | 4 | 9 |
Actinobacteria | Actinobacteria | Bifidobacterium | 4 | 3 |
|
|
| 2 | 2 |
|
|
|
| Eggerthella |
| 1 |
|
|
|
|
|
|
|
Bacteroidetes | Bacteroidia | Alistipes |
| 2 |
| 2 |
|
|
|
|
|
|
| Bacteroides | 29 | 14 | 23 | 19 |
| 74 |
| 34 |
|
|
| Barnesiella |
|
|
| 1 |
|
|
|
|
|
|
| Odoribacter | 1 |
|
|
|
|
|
|
|
|
|
| Parabacteroides | 2 |
| 1 |
|
|
|
|
|
|
|
| Paraprevotella |
| 2 |
| 1 |
|
|
|
|
|
Firimicutes | Bacilli | Enterococcus |
|
| 4 |
|
|
| 2 |
| 52 |
|
| Granulicatella |
|
| 5 |
|
|
|
|
|
|
|
| Lactobacillus |
| 2 |
|
|
|
| 1 |
|
|
|
| Streptococcus | 15 | 4 | 9 |
|
|
|
|
|
|
| Clostridia | Blautia | 1 |
| 3 | 3 |
| 1 | 1 |
|
|
|
| Butyricicoccus |
|
|
|
|
| 1 |
|
|
|
|
| Clostridium | 25 | 2 | 37 | 5 |
| 5 | 16 | 3 | 15 |
|
| Coprococcus |
| 1 |
|
|
|
|
|
|
|
|
| Dorea | 1 | 3 |
|
|
|
|
|
|
|
|
| Eubacterium |
| 5 |
| 1 |
|
| 2 |
|
|
|
| Faecalibacterium | 1 |
|
| 8 |
|
|
|
|
|
|
| Flavonifractor | 8 | 1 |
|
|
| 1 |
|
|
|
|
| Roseburia |
|
|
|
|
|
| 5 |
|
|
|
| Ruminococcus | 1 | 11 | 4 | 12 |
| 1 | 36 | 12 |
|
| Negativicutes | Dialister |
|
|
|
|
|
| 1 |
|
|
|
| Veillonella |
|
|
|
|
|
| 1 |
| 2 |
Fusobacteria | Fusobacteria | Fusobacterium | 1 |
| 1 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Proteobacteria | Gammaproteobacteria | Aeromonas |
|
|
|
|
|
|
|
| 1 |
|
| Klebsiella |
|
|
|
|
|
|
|
| 1 |
|
| Morganella |
|
|
|
|
|
|
|
| 1 |
|
| Shigella |
|
|
|
|
| 1 |
|
| 2 |
| Betaproteobacteria | Parasutterella |
| 1 |
| 1 |
|
|
|
|
|
Verrucomicrobia | Verrucomicrobiae | Akkermansia |
|
|
| 3 |
|
|
|
|
|
Uncultured bacterium |
| 4 | 37 | 7 | 36 |
| 7 | 27 | 9 | 20 | |
Total |
| 93 | 89 | 94 | 92 |
| 93 | 94 | 58 | 94 |