Term

Count

P Value

Genes

Bonferroni

Benjamini

FDR

hsa05200: Pathways in cancer

209

5.31E−07

STAT5A, STAT5B, CTNNB1, CUL2, RARA, RARB, FAS, CCNA1, WNT10A, PLD1, WNT10B, BCR, RXRA, VEGFA

1.05E−04

1.05E−04

6.64E−04

hsa04910: Insulin signaling pathway

91

7.26E−05

PHKB, PRKAG2, PDE3B, FOXO1, AKT1, PDPK1, SHC1, PRKACA, INSR, IRS4, IRS2, SOCS2, MAPK3, MAPK9

0.01

0.0047

0.020

hsa04020: Calcium signaling pathway

114

1.08E−04

SLC8A3, ADCY1, TNNC1, ITPKA, PRKX, ATP2B1, GRIN2D, PRKACA, EGFR, HTR4, GRIN2A, CHP2, MYLK2, CAMK4, CACNA1I, GRIN1, TACR3, PHKB, EDNRA, EDNRB, PLCB4, PLCB1, PLCB2, HTR5A, PRKCA, PTGER3

0.02

0.005

0.013

hsa04510: Focal adhesion

127

2.10E−04

PDGFA, CHAD, VCL, CTNNB1, ILK, CDC42P2, PDGFC, PDGFD, RAPGEF1, EGFR, ROCK1, ACTN4, ROCK2, PIK3CD, ACTN1, MYLK2, PPP1CB, VEGFB, MAPK1, LAMC3, VEGFA, MAPK3, COL1A2, PDGFRA, MAPK9

0.04

0.008

0.026

hsa04520: Adherens junction

55

2.98E−04

WASF3, LOC100271831, WASF1, WASF2, LMO7, IQGAP1, CTNNB1, VCL, ACVR1C, MAP3K7, CDC42, ACVR1B, CSNK2A1, CDC42P2, INSR, PTPRJ, EGFR, PTPRM, PTPRF, ACTN4, BAIAP2, LEF1, ACTN1, CTNNA1, FARP2, MAPK1, EP300, MAPK3, WASL, FGFR1, ERBB2, CTNND1, CDH1, ACP1, TCF7L1, SRC, PVRL1, SORBS1, PVRL2, RAC1, SSX2IP, YES1, PTPRB, ACTB, TCF7, TGFBR1, NLK, MET, CREBBP, TGFBR2, SMAD4, SMAD2, SNAI2, CSNK2A1P, SNAI1, TJP1, FYN, PTPN1

0.057

0.009

0.037

hsa04310: Wnt signaling pathway

98

3.19E−04

PPP2R5B, BTRC, PRKX, CTNNB1, WNT2, MAP3K7, WNT4, CSNK2A1, PRKACA, PRKACB, WNT6, WNT10A, WNT10B, VANGL1, ROCK1, ROCK2, VANGL2, CHP2, SKP1, DVL1L1, EP300, MAPK9, WNT5A, WNT5B

0.061

0.008

0.039

hsa04722: Neurotrophin signaling pathway

82

4.52E−04

FASLG, FOXO3, LOC442113, AKT1, LOC440917, CDC42, MAP3K5, GAB1, CDC42P2, NGFRAP1, SHC1, CSK, FOXO3B, RAPGEF1, FRS2, MAP2K7, AKT3, SHC4, AKT2, MAP2K5, IRAK2, IRS4, IRAK1, IRS2, PIK3CD, TP53

0.085

0.01

0.045

hsa04350: TGF-beta signaling pathway

60

6.47E−04

NOG, E2F4, ACVRL1, E2F5, LOC100271831, GDF5, TGFB3, RPS6KB2, RPS6KB1, ACVR1C, ACVR1B, CDKN2B, ZFYVE9, ZFYVE16, LOC643778, IFNG, MYC, PITX2, PPP2R1B, ROCK1, RBL2, ROCK2, SKP1, INHBB, MAPK1, INHBA, ACVR2A, ACVR2B, EP300, MAPK3, INHBC, ACVR1, BMPR2, DCN, PPP2CA, THBS1, THBS2, TFDP1, BMP2, SMAD9, SMAD7, SMAD6, TGFBR1, CREBBP, TGFBR2, SMAD4, SMAD2, SMAD1, SP1, ID2, ROCK1P1, ID1, SMURF2, ID4, SMURF1, ID3, BMPR1B, BMP7, CHRD, BMP8B, BMP6, BMPR1A, BMP8A

0.12

0.01

0.048