Gene | Primer name | Sequence (5' to 3') | Annealing T (˚C) | Reference |
ESBLs |
|
|
|
|
blaSHV | SHV-F | TTATCTCCCTGTTAGCCACC | 58 | [19] |
SHV-R | GATTTGCTGATTTCGCTCGG | |||
blaTEM | TEM-F | GCGGAACCCCTATTTG | 55 | [19] |
TEM-R | ACCAATGCTTAATCAGTGAG | |||
blaCTX-M1 | CTX-M 1-F | GGTTAAAAAATCACTGCGTC | 56 | [19] |
CTX-M1-R | TTGGTGACGATTTTAGCCGC | |||
blaCTX-M2 | CTX-M2-F | GATGAGACCTTCCGTCTGGA | 61 | [19] |
CTX-M2-R | CAGAAACCGTGGGTTACGAT | |||
blaCMY-2 | CMY-2 F | ATGATGAAAAAATCGTTATGCTGC | 62 | [19] |
CMY-2 R | GCTTTTCAAGAATGCGCCAGG | |||
AmpC | AmpC-F | ATGATGAAAAAATCGTTATGC | 56 | [19] |
AmpC-R | TTGCAGCTTTTCAAGAATGCGC | |||
ExPEC-associated virulence genes |
|
| ||
fimC | fimC-F | TAAGGAAATCGCAGGAA | 52.0 | [20] |
fimC-R | GTCAGGTAATAGGGTGTCG | |||
ompA | ompA-F | TTTTGGATGATAACGAGG | 50.0 | [20] |
ompA-R | TGCTGGGTAAGGAATAAC | |||
betA | betA-F | CGGTTTCGGCGTGGTTAC | 60.0 | [20] |
betA-R | GTGGGCATGTGCGGATTA | |||
ibeA | ibeA-F | AGGCAGGTGTGCGCCGCGTAC | 58.0 | [20] |
ibeA-R | TGGTGCTCCGGCAAACCATGC | |||
rfaH | rfaH-F | TGTATCGCAACACGCACG | 54.0 | [20] |
rfaH-R | AAAACCAGTCGAGCCTTC | |||
irp2 | irp2-F | AAGGATTGCCTGTTACCGGAC | 52.0 | [20] |
irp2-R | TCGTCGGGCAGCGTTTCTTCT | |||
fyuA | fyuA-F | GCTTTATCCTCTGGCCTT | 52.0 | [20] |
fyuA-R | GGCATATTGACGATTAAC |