Primer ID

Primer sequences

SNP type

SNP Position

Ho

He

MAF

PIC

PHWE

SNP1

F: GTGCCGATGTTTATATCAGGCG

R: cacatttctggttcgggctc

AT

97

0.3750

0.5060

0.3125

0.374

0.1368

SNP2

F: AATTCTGGTCCGGCAACAA

R: agcccgagatgaacagagac

AG

118

0.3125

0.3095

0.3125

0.271

0.9550

SNP3

F: TGCAGGTGAACATAGATTTCCAG

R: tgctcctctgatgatggca

AG

104

0.2188

0.2892

0.2188

0.244

0.1510

SNP4

F: TCTTGTCCCTCCACTGTTGC

R: tccggtcacaacttccacc

AG

95

0.2500

0.3472

0.2500

0.283

0.1022

SNP5

F: TCAAACAGGGAGAAACGGC

R: Ttaccacttgaagagactccc

AG

73

0.5938

0.5074

0.1875

0.375

0.3283

SNP6

F: GGAACGTAGGGGAGTTGAGC

R: CACGCACATACGCACATACG

TG

86

0.2500

0.2679

0.2500

0.229

0.6929

SNP7

F: TTCCCAGGTAAAGCCAAGC

R: aatacctcctcgctactcg

AC

106

0.5312

0.4479

0.4063

0.349

0.2828

SNP8

F: AAGTGTTCATCCGCTGGCTTA

R: tcattgtaggtagcccacacg

AC

90

0.6562

0.4836

0.2813

0.363

0.0400*

SNP9

F: GTTAAACTGAATATCAACAGGTG

R: aactttgtaaagtgtcctgg

TG

67

0.3750

0.3810

0.375

0.305

0.9277

SNP10

F: TGTTTGTGTTGCCACTATCAG

R: GCtcaatgtcttgaactggg

AC

64

0.4688

0.5035

0.3125

0.373

0.6917

SNP11

F: TGTTAACGTTTCGGCCTGCTAG

R: agcaggaagtcaacccacg

AC

76

0.4375

0.3472

0.4375

0.283

0.1291

SNP12

F: TTCTCTGTTACAGCAGCGC

R: caatgatagcacaggcagc

AG

95

0.4688

0.5074

0.2500

0.374

0.6612

SNP13

F: TCTGACTGACATCGTGGATCAC

R: atgttctcaggttgcatcagg

CT

70

0.2500

0.4365

0.2500

0.337

0.0136*

SNP14

F: CGTAGGCTGTTGCGTCTC

R: Tgtgcacaagtataggctgc

CT

78

0.2188

0.4241

0.2188

0.330

0.0051*

SNP15

F: ATTCAGCAGTGGACTTGGGG

R: TTCACTCTTTCCCGGGCTTC

CT

118

0.1875

0.3095

0.1875

0.258

0.0206*

SNP16

F: TCTACTATGACGCTGTTACTCCAG

R: atggtcaagtcatcagtggc

AG

83

0.2812

0.3289

0.2813

0.271

0.3967

SNP17

F: ACACGATACTGCTTTGTCAC

R: Gcttctagattagcttagcgc

CT

81

0.3125

0.3810

0.2813

0.305

0.2964

SNP18

F: ATGGATTTGCAGCACGGTTG

R: AGCTAAAACTGGCACGCTCA

AG

102

0.3750

0.5060

0.2500

0.374

0.1368

SNP19

F: CACTGGTGTGTTTGTGTCAAGG

R: tccagcaccatcatcaggtc

TG

67

0.3438

0.5074

0.3438

0.375

0.0637

SNP20

F: AAGAGAGAAAATACCAACACTG

R: aaatgatcctggtccttgc

AG

70

0.5312

0.5035

0.2500

0.373

0.7511

SNP21

F: CGTTGGTTGTTAAGTGGCAG

R: caactaaggcagaagagatagacc

AG

64

0.5000

0.5079

0.2500

0.375

0.9284

SNP22

F: TTGGTTTTTGACGGTGTCGC

R: GGTGGAGTGGCTGTGATTCT

CT

99

0.4375

0.5079

0.2500

0.375

0.4255

SNP23

F: AGAGTGCTGAAGCCTCAACTG

R: acgtgatggaaagggacactg

TG

70

0.2812

0.3289

0.2813

0.271

0.3967

SNP24

F: TTCGGTTACGCGGGAGTTTGTC

R: gtggaacccacagggtaacgtc

CT

117

0.4062

0.4836

0.4063

0.363

0.3570

SNP25

F: AGAGTCAAGACTAAGCGCG

R: ctgtgtgagtttttggtggc

CT

102

0.3438

0.4479

0.3438

0.344

0.1794

SNP26

F: CTGCCGTGACGAGTTCAGAT

R: TGTGCGATCGTGTGACAGAA

CT

71

0.4688

0.4678

0.4063

0.354

0.9902

SNP27

F: CATAACGGACAAGAAAAATGCCTC

R: ttaaccagtgactgtctggac

CT

74

0.5625

0.4762

0.3438

0.359

0.2965

SNP28

F: ACCGTGTGCTTTCAGTTCCTG

R: Gtaacactggagggtggagc

CT

100

0.5312

0.4678

0.3750

0.354

0.4340

SNP29

F: GCCACATTCTACACACTGTCCC

R: tcagcagacgacaatgcagc

CT

75

0.3438

0.4479

0.3438

0.344

0.1794

SNP30

F: TCCTTCTCTGGAGTCTTTGTGC

R: TGTGTTTTGAGGTTTTTGCAAGC

CT

74

0.3750

0.4107

0.3750

0.330

0.6145

SNP31

F: CTCTCCAAGCCTCAGCGAG

R: ACTTCCTCTCCTCCACTGCA

AG

113

0.5000

0.4901

0.3125

0.366

0.9073

SNP32

F: CAGGTCTCAAGCTCACCCTGG

R: actacttgcggatcacttgttgcc

TG

94

0.3125

0.3095

0.3125

0.258

0.9550

SNP33

F: AGCATTGCTTGATAATGACTGCC

R: agcgaatatctgcgaaacgg

AT

98

0.5000

0.5079

0.2188

0.375

0.9284

SNP34

F: GCTGCCACAGTCACAGTTTCAC

R: tcaggtcctcagcatcaacgg

AG

72

0.2500

0.4583

0.2500

0.349

0.0087*

SNP35

F: AGATGCAAGAGGGCCACTTCC

R: agggatagaggctgacgcctg

CT

103

0.1875

0.3095

0.1875

0.258

0.0206*