Software | Description | Website |
CGAP | Plastid genome collection, visualization, content comparison, and annotation tool | http://www.herbbol.org:8080/chloroplast |
CpGAVAS/ CpGAVAS2 | Integrated web server for annotating, visualizing, analyzing and submitting plastid genomes to GenBank | http://www.herbalgenomics.org/cpgavas; http://47.96.249.172:16019/analyzer/home |
CpGDB | Database storing chloroplast genomes, gene sequences and annotation | http://gndu.ac.in/CpGDB/ |
CREx/CREx2 | Visualizes most parsimonious gene order rearrangements between two species | http://pacosy.informatik.uni-leipzig.de/crex; http://pacosy.informatik.uni-leipzig.de/271-0-CREx2.html |
DOGMA | Metazoan mitogenome gene annotation server for both mitogenomes and plastid genomes | https://dogma.ccbb.utexas.edu/ |
GeSeq | Fast, high-quality HMM-based organelle genome annotator, mainly for plastid genomes | https://chlorobox.mpimp-golm.mpg.de/geseq.html |
EqualTDRL | Visualizes hypothetical series of gene order rearrangements between two species | http://pacosy.informatik.uni-leipzig.de/269-0-EqualTdrl.html |
GenomeVx | Gene order visualization on small chromosomes and large plastids | http://wolfe.ucd.ie/genomevx/ |
Mitofish/ Mitoannotator | Annotation database and pipeline for fish mitogenomes | http://mitofish.aori.u-tokyo.ac.jp/ |
MITOS | Metazoan mitogenome gene annotation server | http://mitos.bioinf.uni-leipzig.de/index.py |