| Metric | Model | Mutagenicity | BBBP | HIV | ESOL |
| Fidelity % | Random | 63.19 | 53.16 | 54.23 | 96.95 |
| GNN-Explainer | 35.00 | 86.15 | 77.77 | 95.15 | |
| CF2 | 26.03 | 96.15 | 88.87 | 93.48 | |
| MEG | 43.86 | 53.36 | 46.30 | 87.36 | |
| MMGCF(DFS) | 99.45 | 98.23 | 100 | 100 | |
| MMGCF(BFS) | 99.47 | 98.33 | 100 | 100 |