| Countries for dengue 1 | Hits | MSA-ClustalO |
| Countries for dengue 3 | Hits | MSA-ClustalO |
| Mexico | 115 | 99.38 |
| Timor-Leste | 4 | 99.77 |
| Cambodia | 89 | 98.76 |
| French Polynesia | 18 | 99.74 |
| Vietnam | 67 | 99.24 |
| Pakistan | 6 | 99.59 |
| Singapore | 62 | 99.91 |
| Puerto Rico | 4 | 99.58 |
| Nicaragua | 45 | 99.49 |
| Peru | 47 | 99.57 |
| Thailand | 33 | 97.54 |
| Venezuela | 113 | 99.56 |
| Brazil | 31 | 97.65 |
| Nicaragua | 128 | 99.54 |
| Puerto Rico | 19 | 99.41 |
| Mexico | 3 | 99.39 |
| Colombia | 17 | 99.33 |
| Paraguay | 5 | 99.33 |
| China | 14 | 95.72 |
| Brazil | 89 | 99.3 |
| India | 7 | 98.12 |
| Vietnam | 9 | 99.29 |
| French Polynesia | 6 | 99.94 |
| Cambodia | 66 | 99.26 |
| Sri Lanka | 6 | 99.77 |
| Bangladesh | 9 | 99.17 |
| Japan | 5 | 94.48 |
| Singapore | 47 | 99.17 |
| Argentina | 4 | 98.85 |
| Taiwan | 16 | 99.06 |
| Countries for dengue 2 | Hits | MSA-ClustalO |
| Sri Lanka | 13 | 98.18 |
| Nicaragua | 191 | 99.19 |
| India | 4 | 97.93 |
| Vietnam | 63 | 99.2 |
| China | 14 | 95.84 |
| Thailand | 62 | 97.79 |
| Colombia | 18 | 95.84 |
| Puerto Rico | 55 | 98.64 |
| Indonesia | 29 | 87.75 |
| Brazil | 47 | 98.04 |
| Countries for dengue 4 | Hits | MSA-ClustalO |
| Cambodia | 47 | 97.63 |
| Venezuela | 41 | 99.46 |
| Venezuela | 40 | 98.76 |
| Brazil | 19 | 98.86 |
| Peru | 25 | 98.16 |
| Colombia | 8 | 99.79 |
| Mexico | 23 | 99.45 |
| Thailand | 6 | 94.63 |
| Japan | 19 | 99.24 |
| Cambodia | 4 | 99.17 |
| Colombia | 18 | 98.58 |
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| French Guiana | 14 | 98.6 |
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| Indonesia | 14 | 97.1 |
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| China | 10 | 95.4 |
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| Pakistan | 9 | 99.14 |
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| Singapore | 8 | 98.95 |
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| Tonga | 8 | 99.84 |
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| Cuba | 6 | 99.92 |
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| Martinique | 6 | 99.69 |
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| India | 5 | 97.84 |
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| American Samoa | 4 | 99.78 |
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| Dominican Republic | 4 | 99.98 |
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| Samoa | 4 | 99.71 |
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