| NCBI ID nucleotide― DQ181806 | NCBI ID protein― ABA61185 | Region |
| 109..438 | 5..114 | Flavivirus capsid protein C (C) |
| 451..708 | 119..204 | Flavivirus polyprotein propeptide |
| 712..936 | 206..280 | Flavivirus envelope glycoprotein M (prM) |
| 937..1824 | 281..576 | Flavivirus glycoprotein, central and dimerization domains |
| 1849..2118 | 585..674 | Immunoglobulin-like domain III (C-terminal domain) of Flavivirus envelope glycoprotein E |
| 2131..2421 | 679..775 | Flavivirus envelope glycoprotein E, stem/anchor domain (E) |
| 2425..3489 | 777..1131 | Flavivirus non-structural Protein NS1 (NS1) |
| 3508..4131 | 1138..1345 | Flavivirus non-structural protein NS2A (NS2a) |
| 4141..4521 | 1349..1475 | Flavivirus non-structural protein NS2B (NS2b) |
| 4573..5025 | 1493..1643 | Peptidase S7, Flavivirus NS3 serine protease (NS3) |
| 5065..5496 | 1657..1800 | DEAD-like helicases superfamily |
| 5086..5475 | 1664..1793 | DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region |
| 5584..5913 | 1830..1939 | Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins |
| 6385..6816 | 2097..2240 | Flavivirus non-structural protein NS4A (NS4a) |
| 6826..7566 | 2244..2490 | Flavivirus non-structural protein NS4B (NS4b) |
| 7732..8235 | 2546..2713 | FtsJ-like methyltransferase |
| 8320..10257 | 2742..3387 | Flavivirus RNA-directed RNA polymerase (NS5) |