| Water resource | Countries sharing | Basin wide |
| River Nile | Uganda, South Sudan, Sudan, Egypt | Burundi, DRC, Egypt, Ethiopia, Kenya, Rwanda, South Sudan, Sudan, Tanzania, Uganda, Eritrea |
| River Achwa | Uganda, South Sudan | Uganda, South Sudan |
| River Kagera | Tanzania, Burundi Rwanda, Uganda | Nile Basin Riparian States-Burundi, Tanzania, Rwanda, Uganda |
| River Semliki | DRC, Uganda | Nile Basin Riparian States |
| River Malaba | Kenya, Uganda | Kenya, Uganda |
| River Sio | Kenya, Uganda | Kenya, Uganda |
| Lake Victoria | Uganda, Kenya, Tanzania | Nile Basin Riparian States |
| Lake Albert | DRC, Uganda | Nile Basin Riparian States |
| Lake Edward | DRC, Uganda | DRC, Uganda |
| Sango Bay Swamp | Tanzania, Uganda. | Kenya, Burundi, Rwanda |