Location/type | H. annuus 2023B | Common sites in 2023B | Unique sites in 2023B | H. annuus ID25 | Common sites in ID25 | Unique sites in ID25 | H. annuus TX16R | Common sites in TX16R | Unique sites in TX16R | ||||||
C | I | C | I | C | I | C | I | C | I | C | I | ||||
Protein coding transcripts | 170 | 170 | 158 | 12 | 12 | 168 | 168 | 166 | 2 | 2 | 175 | 177 | 169 | 6 | 8 |
First codon position | 53 | 52 | 50 | 3 | 2 | 53 | 52 | 52 | 1 | 0 | 50 | 52 | 50 | 0 | 2 |
Second codon position | 97 | 94 | 90 | 7 | 4 | 97 | 96 | 96 | 1 | 0 | 99 | 101 | 96 | 3 | 5 |
Third codon position | 20 | 24 | 18 | 2 | 6 | 18 | 20 | 18 | 0 | 2 | 26 | 24 | 23 | 3 | 1 |
Creation of start codon | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Substitution of start codon | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Creation of stop codon | 1 | 2 | 1 | 0 | 1 | 1 | 1 | 1 | 0 | 0 | 1 | 1 | 1 | 0 | 0 |
Substitution of a stop codon | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Non-synonymous substitutions | 149 | 145 | 139 | 10 | 6 | 149 | 147 | 147 | 2 | 0 | 149 | 153 | 146 | 3 | 7 |
Synonymous substitutions | 21 | 25 | 19 | 2 | 6 | 19 | 21 | 19 | 0 | 2 | 26 | 24 | 23 | 3 | 1 |
Non-protein coding transcripts | 194 | 220 | 176 | 18 | 44 | 207 | 219 | 192 | 15 | 27 | 238 | 230 | 207 | 31 | 23 |
tRNA | 3 | 3 | 3 | 0 | 0 | 3 | 3 | 3 | 0 | 0 | 3 | 3 | 3 | 0 | 0 |
rRNA | 3 | 3 | 2 | 1 | 1 | 3 | 2 | 2 | 1 | 0 | 5 | 3 | 2 | 3 | 1 |
Long noncoding RNA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Intergenic region | 188 | 214 | 171 | 17 | 43 | 201 | 214 | 187 | 14 | 27 | 230 | 224 | 202 | 28 | 22 |
Total no of sites | 364 | 390 | 334 | 30 | 56 | 375 | 387 | 358 | 17 | 29 | 413 | 407 | 376 | 37 | 31 |