| Primer or probe | Sequence (5’ to 3’) | Location | Product size (bp) |
| HPV 16 E6-F | GCACCAAAAGAGAACTGCAATGTT | 85 - 108 | 152 |
| HPV 16 E6-R | AGTCATATACCTCACGTCGCAGTA | 197 - 236 |
|
| HPV 16 E6-P | GGACCCACAGGAGCGACCCAGAAAGTTA | 112 - 139 |
|
| HPV 16 E7-F | CAAGTGTGACTCTACGCTTCGG | 738 - 759 | 81 |
| HPV 16 E7-R | GTGGCCCATTAACAGGTCTTCCAA | 796 - 818 |
|
| HPV 16 E7-P | TGCGTACAAAGCACACACGTAGACATTCGT | 763 - 792 |
|
| HPV 18 E6-F | CTATAGAGGCCAGTGCCATTCG | 503 - 524 | 79 |
| HPV 18 E6-R | TTATACTTGTGTTTCTCTGCGTCG | 558 - 581 |
|
| HPV 18 E6-P | CAACCGAGCACGACAGGAACGACTCCA | 530 - 556 |
|
| HPV 18 E7-F | TAATCATCAACATTTACCAGCCCG | 721 - 744 | 113 |
| HPV 18 E7-R | CGTCTGCTGAGCTTTCTACTACTA | 810 - 833 |
|
| HPV 18 E7-P | CGAGCCGAACCACAACGTCACACAATGTT | 745 - 774 |
|
| HPV 31 E6-F | AAGACCGTTGTGTCCAGAAG | 428 - 447 | 106 |
| HPV 31 E6-R | GTCTTCTCCAACATGCTATGC | 511 - 534 |
|
| HPV 31 E6-P | CGTCCTGTCCACCTTCCTCCTATG | 488 - 511 |
|
| HPV 31 E7-F | TGTGTTAGATTTGCAACCTGAG | 592 - 613 | 78 |
| HPV 31 E7-R | ACATCCTCCTCATCTGAGCT | 669 - 649 |
|
| HPV 31 E7-P | CAACTGACCTCCACTGTTATGAGCAAT | 615 - 641 |
|
| HPV 33 E6-F | TGCACGACTATGTTTCAAGAC | 100 - 120 | 132 |
| HPV 33 E6-R | CTCAGATCGTTGCAAAGGTTT | 211 - 231 |
|
| HPV 33 E6-P | ATTCCACGCACTGTAGTTCAATGTTGT | 179 - 205 |
|
| HPV 33 E7-F | TTGTAACCTGTTGTCACACTTG | 733 - 754 | 88 |
| HPV 33 E7-R | AGTAGTTGCTGTATGGTTCGTA | 799 - 820 |
|
| HPV 33 E7-P | ACTTGCTGTACTGTTGACACATAAACGA | 767 - 794 |
|